Rahnella aquatilis HX2: Q7S_03650
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Entry
Q7S_03650 CDS
T01850
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03410
Base excision repair
raa03430
Mismatch repair
raa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Q7S_03650
03430 Mismatch repair
Q7S_03650
03440 Homologous recombination
Q7S_03650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raa03400
]
Q7S_03650
DNA repair and recombination proteins [BR:
raa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Q7S_03650
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Q7S_03650
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q7S_03650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
DUF4180
Motif
Other DBs
NCBI-ProteinID:
AFE56989
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Position
793703..795436
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AA seq
577 aa
AA seq
DB search
MTLQTQLRRREAATGVDLPAELSPLLRRLYLARGVTQSQELERGVRGMLPYQQLDGIDTA
VALLQKALAERLRIIIVGDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPE
VVEQAASRGAELILTVDNGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLV
GCEFPSKSLAGVGVAFYLMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPL
DTNNRIMVYQGLNRIRAGKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDM
SVGVALLLSEDIGQARALASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAM
YHPEWHQGVVGILASRLKERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTID
TAEMLRDGGPWGQAFPEPTFDGRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPT
FWPDSSIREVQLAYRLDINEFRGNRSVQLIIEHLWPK
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttgcagactcaacttcgccgtcgtgaggcggcgactggcgtggatcttcccgcc
gaactctccccgctgttacgccggctgtatctcgcccgcggtgtgacacaaagccaggag
ctggagcgcggcgtgcgcggtatgctgccttatcagcagcttgatggcattgataccgcc
gttgccttgctgcaaaaagcgctggctgagcgtctgcgcataattatcgttggcgacttc
gatgccgatggcgcgaccagtacggcgctgacgttgctttccttgcgcagcatgggctgc
ggtaatctggattatctggtgccgaaccgttttgaagacggttatggtctcagcccggaa
gtggttgaacaggcggcgtcgcgcggtgcagagttgatcctcaccgtcgataacggcatt
tcttctcacgcgggcgtgacgctcgcccatgaaaaaggcattcaggtgctgatcaccgat
caccacttgccgggcgaaatattgccggatgccgaagcgatcattaacccgaatctggtc
ggttgcgagtttccgtccaaatcgctggcgggtgtcggtgtggcgttttatctgatgctg
gcgctgcgcagtgcattacgcgaaagtggctggtttgaacaaaacggtctggcgatcccc
aatctcgcggagcatctggatctggtggcgctcggcaccgtcgcggatgtcgtgccgctt
gataccaacaatcgcatcatggtgtatcaggggctgaaccgcattcgtgccggaaaatgc
cgtgcggggatccgcgcgttgctggaagtggccgggcgcgaagcccgtacgctgtgcgcc
agtgatttaggttttgcgcttggaccacggctgaatgccgccggacgtcttgatgatatg
tcggttggcgtggcgctgttactcagtgaagacatcggtcaggcgcgtgcgctggccagc
gatctggatgcgctgaaccagacccgccgtgagatagagcagggcatgcaggtcgaagcg
ctggcgctgtgtgacaagctggaaagcagtaccgacgcgctgccgttcgggctggcgatg
tatcatcccgagtggcatcagggcgtggtcggcattctggcatcacgtctgaaagagcgt
tttaatcgcccggtgattgcgttcgcaccggcgggtgagggcattctgaaaggatccggt
cgttcgattgccggattgcatatgcgcgatgcgctggaacgtctcgatacgcttaatccc
ggtctgatgatgaaattcggcggacacgcgatggcagccggtttgtcgctggaagagagc
aagttcgacgaatttcgtgatcgtttcgctgcactggtcggtgaatggctggatccttcg
catctggaaggtgtggtctggtcggatggcgagctgtcggcccgtgaactgacgattgat
acggctgaaatgctgcgcgacggcggcccgtggggacaggcgttcccggaaccgaccttt
gacggcaggttccgtatcctgcaacagaaactgctgaaagagcgtcatctcaagctgatg
attgaacccgtcggcggcggtccgttgctcgatggtattgcttttaatatcgatccgact
ttctggccggacagcagcatccgcgaagtgcaactggcctaccggctggatatcaatgaa
tttcggggaaatcgcagcgttcagttgattatcgaacatttatggccgaaataa
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