Rahnella aquatilis HX2: Q7S_20995
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Entry
Q7S_20995 CDS
T01850
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q7S_20995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raa03021
]
Q7S_20995
03400 DNA repair and recombination proteins [BR:
raa03400
]
Q7S_20995
Enzymes [BR:
raa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q7S_20995
Transcription machinery [BR:
raa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q7S_20995
DNA repair and recombination proteins [BR:
raa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q7S_20995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFE60408
LinkDB
All DBs
Position
complement(4598923..4603143)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRGG
LASLHARVKVRITEEIKNTEGEVTHKTSIIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDILKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGTIKL
SNHKHVSNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGASVNGGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTDFLEGEQAEMSRVKIANRQLEAEGKITATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKAQGEVPV
VPQVSADEATANLAELLNAGFGNSDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcccgt
attttcggaccagtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgactgcacacatctggttcctgaaatcgctg
ccatcgcgcatcggtttgctgctggatatgccactgcgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgactaacctcgaaaaacgccagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggtgcggaagcaattcaggctctgttgaaaaacatggacctggaagcagagtgcgagcaa
ctgcgtgaagagttgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgact
gtgttgccggtactgccgccagacttgcgtccattggttccgttggacggcggccgtttc
gcaacgtcagatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagacatcattgtacgtaacgaaaaacgtatgctgcaa
gaagcggtagatgctttgctggataacggccgtcgcggtcgtgcaatcaccggctctaac
aagcgtccgctgaaatctctggcagacatgattaaaggtaaacagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactcgggtcgttccgttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggcatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactatatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggttctgactggtcctaaagaagctgagcgtatttatcgcggcggt
ctggcctctctgcatgcgcgtgtcaaagtgcgtatcaccgaagagatcaaaaataccgaa
ggcgaagttacgcacaagacgtcgattatcgacacgactgtcggtcgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgttctcgatcgtcaaccagcctctgggcaaaaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttattttt
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggcgcgtcagtaggt
atcgatgacatggtaatccctgcgaagaaagcagagatcatcgaagaagcagaaaccgaa
gttgctgaaatccaggaacagttccagtctggtctggtcactgctggcgaacgctataac
aaagtgatcgacatctgggctgcggccaacgaacgtgttgctaaggcaatgatggaaaac
ttgtctgttgaagacgtcgtcaaccgtgacggtgttgttgaacagcaggtttccttcaac
agtatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gctggtatgcgtggcctgatggcgaaaccagatggttccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcacaggatctggtcgtgaccgaagacgactgtggtactcacgaaggcatc
atgatgactcctgtcatcgaaggtggcgacgttaaagaaccactgcgtgaacgtgtgctg
ggtcgtgtgactgcagaagatatcctcaagccgggtacggcggatatcctggttccacgt
aacaccctgcttcacgagaagacgtgtgatctgttagaagagaactctgtcgacagtgtg
aaagtacgttcagtcgtaagttgcgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttattgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcattcaggttaagaacaccggtaccattaagctg
agcaaccacaagcatgttagcaactctaacggcaaactggttatcacttcccgtaacact
gagctgaaattgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
tccgtgatgggcaaaggtgatggcgcatctgttaacggcggcgaaaccgtggctaactgg
gatccgcacaccatgccagttatcagtgaagtgagtggtttcattcgctttgccgatatg
gtggatactcagaccattacccgccagaccgacgacctgaccggtttgtcttctctggtg
gttctggactctgcagagcgtaccggtagcggtaaagacctgcgtcctgcactgaaaatc
gttgatgctaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgcctggtaaagcgattgttcagctggaagatggtactcagatccactctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgatctgttcgaagcacgtcgtccgaaagagcctgcaatccttgctgaaatcagc
gggatcatctccttcggtaaagaaaccaaaggcaaacgtcgtctggtaatttctccgttg
gatggcagcgatgcttacgaagaaatgattcctaaatggcgtcagctgaacgtgttcgaa
ggcgaagttgtggaacgtggtgacgtcgtatctgacggccctgagtctccgcacgacatt
ctgcgtttacgtggtgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgctggtggcactgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgccagctggaagctgaaggcaaaatcacggcg
acctttacccgtgatctgctcggtatcaccaaagcctctttggcgaccgaatccttcatc
tctgcagcgtcgttccaggaaaccacgcgcgttcttaccgaagccgctgttgcgggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgttggccgtctgatcccagccggt
accggttacgcttatcaccaggatcgtgcacgccgtaaagcacaaggcgaagtgccagtt
gtaccgcaagtcagcgcggatgaagcaacggctaacctggctgaactgctgaacgcaggt
ttcggtaacagcgacgattaa
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integrated database retrieval system
