Rahnella aquatilis HX2: Q7S_21560
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Entry
Q7S_21560 CDS
T01850
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03420
Nucleotide excision repair
raa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q7S_21560 (uvrD)
03430 Mismatch repair
Q7S_21560 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raa03400
]
Q7S_21560 (uvrD)
Enzymes [BR:
raa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q7S_21560 (uvrD)
DNA repair and recombination proteins [BR:
raa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q7S_21560 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
Q7S_21560 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFE60517
LinkDB
All DBs
Position
complement(4729070..4731232)
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAV
TFTNKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQI
RLIKRLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDN
NNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAANSLIENN
NGRMGKNLWTEDGEGEPISLYCAFNELDESRFVVNRIKTWQDNGGALKDCAILYRSNAQS
RVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSDMPLHVQ
TDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAAL
EAGEGQADANQDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRMRASVSRPMSNRSVG
TPTSVSDTGFKLGQRVVHPKFGEGTIVNMEGSGEHSRLQVAFPGEGIKWLVAAYARLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgacctgctcgacagcctgaatgaaaaacaacgtgaagccgtggccgcg
ccgcgcagcaatctgttggtgctggccggagcaggcagtggcaaaacccgcgtgctggtt
caccgcatagcgtggttgctggcggtagaaaagtgctcgccgtattctattatggccgtc
acatttaccaataaagcggcggcagaaatgcgccaccgtatcgaccagctgatcggcacc
agtcagggcggcatgtggattggtaccttccacggcctcgcgcaccgtttgctgcgtgca
caccatttagacgccaatttgccacaggatttccagatcctcgacagtgatgaccagata
cgtctgatcaaacgcctgatcaaagccctgaacatcgacgataaacaatggcccccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaaggtctgcgcccgcagcatgtcgaa
acctacaacaatcccgttgaagcgacctggttacgcatttatcaggcctatcaggaagct
tgtgaccgtgccgggctggtggattttgccgagctgttgctgcgcgcccacgaactctgg
ctgaacaagccgcatattttgcagcattaccgcgaacgttttaccaacctgatggtggac
gaattccaggacaccaacagcattcagtacgcgtggatccgcctgctggcaggtgacaac
aataatgtgatgatcgtgggtgatgatgaccagtcgatttacggctggcgcggtgcgcag
gttgaaaacatccagcgcttcctgaaagatttcccgaatgcacaaaccatccgtctggag
cagaactaccgttcaaccagcactatcctgaaagccgccaactcattgattgaaaacaac
aatggacgtatgggtaagaacctgtggaccgaggacggcgaaggcgaaccgatttcactc
tattgcgcattcaacgaactggatgaatcgcgctttgtggttaaccgcatcaaaacctgg
caggacaacggcggtgcgctgaaagattgcgccattctttaccgcagcaacgcccagtcg
cgtgtgctggaagaagccttattgcagatggcgatgccataccgtatttatggcggtcag
cggttcttcgaccgtcaggaaatcaaagatgcgctggcgtatctgcgattgatgtcgaac
cgcaatgacgatgccgcttttgagcgcgtggtgaacacaccgacgcgcggcatcggcgac
cgcacgctggatgtggtgcgccagacagcacgtgatcgtcagatgaccatgtggcaggcc
acccgcgcgctgttgcaggaaaaagtgctggcaggtcgtgcggcatcttcactgcaacgc
ttcaccgaactggttgacgcactggcgcatgaaacctcagatatgccgctgcacgtgcag
actgaccgggtgattaaagattccggcctgttcatcatgtatgagcaggaaaaaggcgaa
aaagggcaggcgcgaatcgaaaacttagaggaactggtgacagcaacacgccagttcagc
tatcaggatgaagacgaagacctgatgccgttgcaggcgtttctgtcgcatgccgcgctg
gaagcgggcgaagggcaggcggatgccaatcaggatgcgacgcagttaatgacactacac
tcggcgaaagggctggagttcccgcaggtgtttatcgtcggtatggaagagggcatgttc
ccgagccagatgtcgctggaagaaggcggacgtctggaagaagaacgccgtctggcgtat
gtcggcgtcacccgcgctatgcaaaaattgaccctgacctacgcggaaacccgccgttta
tacggcaaagaagtgtctcatcgcccgtcacgttttgtcggcgaactgccggaagattgt
gtcgaagaagtcaggatgcgcgccagtgtgtcacgcccgatgagcaaccgcagcgtcggc
acgccaaccagcgtcagcgacaccggcttcaaactcggccagcgcgttgtgcatcctaaa
ttcggcgaaggtactatcgtcaatatggaaggcagcggggaacacagccgtctgcaggtg
gcgttcccgggcgaagggattaagtggctggttgccgcctatgcccgcctcgaagccgtc
tga
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