Rickettsia amblyommatis Ac37: AL573_01415
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Entry
AL573_01415 CDS
T04237
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rab
Rickettsia amblyommatis Ac37
Pathway
rab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL573_01415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rab03021
]
AL573_01415
03400 DNA repair and recombination proteins [BR:
rab03400
]
AL573_01415
Enzymes [BR:
rab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL573_01415
Transcription machinery [BR:
rab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL573_01415
DNA repair and recombination proteins [BR:
rab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL573_01415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ALA61454
LinkDB
All DBs
Position
268012..272130
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDIEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQITSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNTNKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKSEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIMDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDDPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTYKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEAKLEQIESAGLDRIIIKSVLTCESTTGICSTCYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNSNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPVDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLAGEKIDRHEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaggtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacttttaaacctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggaattacgtgtgagaaatgcggcgttgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgcagctcccgttgctcatatttggtttttaaagtcgctacct
tcaagaattagtacacttcttgatatgacaatgcgagatatagaaaagattctttatttt
gaaaattatgtagtagttgacccagggctatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatacgaggaattacaaatcacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagaggattttttagagtcggaaaacaagccggaatggatgattatggat
gttttaccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcagacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcaaaaaatactaat
aagcgtccatttaagtcattaagtgatatgctgaaaggtaagcaggggcgtttccgtcag
aacttgctaggtaagagggttgattactcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaagccgttt
atttattctaagcttgagttgtacggcatcgctacaactattaaagccgctaaaagaatg
gtggaagctgaaaaatccgaagtgtgggacgtgcttgaagaggtaattagagagcatccg
gttttacttaatagggctccgacattacataggcttggtattcaagcatttgaaccgcta
ttaattgaaggtaaagcgatccagctgcatccgcttgtgtgtgctgcgttcaatgcggat
tttgatggtgatcagatggcagtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccccgcaaacggtcgtcctatcatt
gtaccagataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggcgcaggaatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggttcctgttatcatggatactacttacggtaggttaatggtcggtgagttattgcct
tctaaccctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacagtaatttttgccgat
cagctaatgaaattgggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaacgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataataaagta
gtcgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgccgccggttaatgatgatccaaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaagcagctaggcggtatgcgaggttta
atgaccaaatcaaatggtcaaattatacaaactcctattatttctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacggcaagctcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaacttataaaggaattgaagttaagagtgttatt
gaaggcggagaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatt
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcagcgggacttgacagaattattataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcacatgttacggtagggatcttgctaccggt
acattagtatcggagggtgaagcaatcggggttattgctgctcaatctatcggtgaaccg
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagccgtaacgttgtt
attaattccgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aataacagtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacggtgatatggtgattaaaactcaaaaactagcagagtgggatccttatactataccg
attatcaccgagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgcccgcgtatacagcttttagatgctaaaggtgaagtt
atcaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccgagagttgccgagcttgtagaagcaaga
cgccctaaagatcatgcagttattgccgaaattgatggtagagtagaattcggtaaagac
tataaatctaaaagacgtattattatacatccggttgatgaaacaatgtctattgagtat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggtgat
ttattgattgacggtaatccggtacttcaagatattttaaaagtaatgggcgtagaggtt
cttgcaaattatattgttaaggaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggttacagat
tcaggtggaactacgttattagcaggtgaaaaaatagatagacatgaatttgatgagata
aatgaaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctctgcggcatcattccaagagact
actagagttttaactgaagcagctattgccggtaaagtagataagttgcgaggactaaaa
gaaaacgtgatagttggacgattagtacctgccggaaccggttactttatggataaaatg
cgtaaagcagccgtaaagcttgatgaagagaatgtataa
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