Rodentibacter abscessus: THUN1654_03380
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Entry
THUN1654_03380 CDS
T10998
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rabs Rodentibacter abscessus
Pathway
rabs03410
Base excision repair
rabs03430
Mismatch repair
rabs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THUN1654_03380 (recJ)
03430 Mismatch repair
THUN1654_03380 (recJ)
03440 Homologous recombination
THUN1654_03380 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rabs03400
]
THUN1654_03380 (recJ)
DNA repair and recombination proteins [BR:
rabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
THUN1654_03380 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
THUN1654_03380 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THUN1654_03380 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
T6SS_Tle1-like_C
Motif
Other DBs
NCBI-ProteinID:
BFU59501
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Position
394360..396087
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AA seq
575 aa
AA seq
DB search
MNKLIKRREIPTGNSVSENPLLDRLYRARHIKNTQELDRTLKSMLNPARLYGIAQAVELL
VSAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFTDVDYLVPNRFEQGYGLSVSVAEM
AIEKGVQLLMTVDNGVSSFEGIEFLKAQGVQVLVTDHHLPSDILPPADAIVNPNLSQCDF
PSKSLAGVGVAFYLMLAVRAKFRENGIFTEKNQPNFTELLDLVALGTIADVVPLDQNNRI
LAHQGLMRIRAKHCRPGIIALAEVANRDIEQCSAGDLGFSIAPRLNAAGRLDNMSLGVEL
LLAENMQKARELALDLDQLNQTRKEIEAGMKLEALEICRNLTALFKELPIGIALYQADWH
QGVLGIVSSRIKDQYHRPVIAFAQDEAGVLKGSARSIEGLHIRDLLERIHSQYPDMILKF
GGHAMAAGLSIREECFGEFQQIFNQTVTNWLDEERLQGVIWTDGELKSSEFTLDTAEQLR
AAGPWGQGFPEPSFDGEFKILEQRVVGANRNHLKMLVEPKSGGVLLDAIAFNIDTRRYPD
LSIKQARLAYKLDINEFRGNRYIQLLIDYIEPIDE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaactcatcaaacgtcgtgaaattccaacaggaaattctgtttcagaaaatccg
ctgttggatagactttatcgcgcacgccatatcaaaaacacgcaagaattagaccgcact
ttaaaatcaatgctgaacccggctcgcttatacggtattgctcaagccgtagagttactg
gtatcggcttatcagcagcaacaaaaaatcgtgattgtcggtgattttgatgcggatggc
gcaacaagtacggcattgagtgtgcttgctctccgtcagttgggttttaccgatgttgat
tatcttgtgcctaatcgttttgagcaaggctatggtttaagtgtttccgtagcggaaatg
gcgattgaaaaaggcgttcagttgttgatgacggtggataacggcgtttcctcttttgag
ggaatcgaatttttaaaggcgcaaggcgtacaggttttggttaccgatcaccatttacct
tcggacattttgccgccagccgatgcgattgtgaatccgaatttaagtcaatgcgatttc
ccttcaaaatccttggcgggcgtaggggttgccttttatcttatgcttgccgtgcgggct
aaattccgagagaacggcatttttacggagaaaaaccaacccaattttaccgaattgctt
gatcttgtcgcacttggcacaattgctgatgtcgtgccactcgatcaaaataatcgcatt
ttggcgcatcagggcttgatgcgtatccgtgccaaacattgtcgcccgggaattatcgct
ttagcggaagtggcaaatcgtgatattgaacaatgttcagccggggatctcggtttttct
attgctccccgtttaaatgcggcagggcgattggataatatgtcccttggtgtggaacta
ttactcgccgaaaatatgcaaaaggcacgtgaattggctttagatcttgatcagttaaat
caaacccgtaaagaaattgaagcgggaatgaaacttgaggccttagaaatttgccgaaat
ttgaccgcacttttcaaagaattacccatcggcattgcgctttatcaggcggattggcat
caaggcgtattgggaattgtttcctctcgaattaaagatcaatatcatcgacctgtcatt
gcttttgcacaagatgaagcgggtgtgctaaaaggttcggcacgttctattgaaggttta
cacattcgggatctactggaaagaatccattctcaatatcctgatatgatcctaaaattt
ggcggtcacgcaatggcagccggattgagcattcgtgaagaatgctttggggaatttcag
caaatttttaatcaaaccgttacaaactggttggacgaagaacgtttacaaggggtgatc
tggactgacggcgagctgaaatcaagtgagtttacacttgatacggctgaacaattaaga
gcggcaggaccttggggacaaggattccccgaaccttcttttgacggtgaatttaaaatt
ttagagcagcgagtcgtgggggcaaaccgcaatcatctaaaaatgttggtcgagccgaag
tcgggaggtgtgcttttagatgctattgcctttaatattgatactcgacgctatccggat
ttatccataaaacaggcacgtttagcttacaagctggatataaatgagtttcgtggtaat
cgttacatacagttattgatagattatattgaacccattgatgaataa
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