Rodentibacter abscessus: THUN1654_06430
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Entry
THUN1654_06430 CDS
T10998
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rabs Rodentibacter abscessus
Brite
KEGG Orthology (KO) [BR:
rabs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rabs03032
]
THUN1654_06430 (topA)
03400 DNA repair and recombination proteins [BR:
rabs03400
]
THUN1654_06430 (topA)
Enzymes [BR:
rabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
THUN1654_06430 (topA)
DNA replication proteins [BR:
rabs03032
]
Prokaryotic type
DNA Topoisomerases
THUN1654_06430 (topA)
DNA repair and recombination proteins [BR:
rabs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
THUN1654_06430 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_ribbon_LysW
DUF4795
Toprim_2
DUF2399
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BFU59806
LinkDB
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Position
746070..748664
Genome browser
AA seq
864 aa
AA seq
DB search
MVIVESPAKAKTINKYLGSQYVVKSSVGHIRDLPTVGSGSGEKAKPVSTKGLSVEEKAKI
KAEKERNALVKRMGIDPYHDWQANYQILPGKEKVVAELKSLAKKADHIYLATDLDREGEA
IAWHLREVIGGDDARFSRVVFNEITKNAIKQAFEKPEHLNMDRVNAQQTRRFLDRVVGFM
VSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQPEEFWEVAVVTQTQGKKVIRLEV
TDYKGKKFAPKNQKEAQSAVDFLNVSDYVVTNLETKPTSSRPRAPFITSTLQQTASTRLG
FGVKKTMMLAQRLYEAGYITYMRTDSTNLSQDALNMARGYIETHFGGAYLPEKPNFYSSK
ENAQEAHEAIRPSDIEMLPEHLSGMEKDAVRLYDLIWRQFLACQMPPAQYDSSTLSVTAG
DYTLKAKGRILRFDGWTKVLPQMGKNPEDQELPLVKVAEKLALQEVQPSQHFTKPPARFT
EAALVKELEKRGIGRPSTYATIISTIQERGYVRTENRRFYAEKMGEIVTDRLSESFSELM
SYDFTANMEDALDKIASGSVNWKTELNQFFKDFSNQLSKAELDELEGGMRPNSLVETDIK
CPTCGRNMAIRTASTGVFLGCTGYALPPKERCKTTINLIPETELLNILDDSSETKALMER
KRCEKCGTAMDSYVIDAHRKIHICGNNPNCDGYLIEEGSFKIKGYDGPIVECDKCGADMH
LKLGRFGKYMGCTNCDNTRKILKNGEVAPPKEEPVHFPELKCEKSDAYFVLRDGASGVFM
SAHNFPKSRETRAAKVAELALYRDRLPEKLAYLADAPQKDPEGNEAIIRFSRKEKKQYVT
SEKNGKATKWIVDFIDGKWVERKK
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
ttggtgattgtggagtcacctgcaaaagcgaaaacgattaataaatatctaggtagccaa
tatgttgtgaaatccagcgtgggacatatccgtgatttaccgaccgtgggttcgggatca
ggagaaaaggctaaacctgtttcaactaaaggattaagtgttgaggaaaaggcaaagatc
aaagctgaaaaggagcgcaatgctcttgtaaaacgtatggggattgatccttatcacgat
tggcaggcgaattatcaaattttgccgggaaaagaaaaagtggtggcggaattgaaatca
ctcgccaaaaaagcggatcatatttatctggcaaccgatttggatagagaaggggaagcc
attgcttggcatttacgtgaagtgattggcggagatgatgcgcgttttagccgagtggta
tttaatgagatcactaaaaatgctattaaacaagcctttgaaaaacctgaacatttgaat
atggatcgtgtaaatgcgcagcaaacacgccgttttcttgatcgtgttgtgggttttatg
gtttcaccattgctatggaaaaaagtggcgcgaggattgtctgccggtcgggtgcaatct
gttgcggtaaaactattggtagaacgtgaacgggagattaaagctttccaaccggaagaa
ttttgggaagtcgcggttgttacacaaactcagggtaaaaaagtcattcgtttggaagta
acagactacaaaggcaaaaaatttgctccgaaaaatcagaaagaagcccaaagtgcggtt
gattttctcaatgtttctgattacgttgtcacaaatttagagacaaaacccacaagctcg
cgtccgcgtgcgccatttattacatcaacacttcaacaaacagccagtacacgtttaggc
tttggcgtgaagaaaaccatgatgttggcacagcgtttgtatgaagccggttacattact
tatatgcgtaccgattcaactaatttaagtcaagatgcgttgaatatggcacgcggctac
attgaaactcactttggtggagcatatttgccggaaaaaccgaatttttattccagcaaa
gaaaatgcgcaagaagcacacgaagcaattcgcccttccgatattgaaatgttaccggaa
catttaagcggaatggaaaaagatgcggtgcgcctttatgatttaatttggcgtcagttc
ttggcgtgtcaaatgccaccggctcaatatgacagtagcacgcttagtgtgactgcgggt
gattatacattaaaagcaaaaggtcgaattttacgctttgatggttggacaaaagtgtta
ccgcaaatgggcaaaaatccggaagatcaagagttacctttagtcaaagttgcagaaaaa
ctagctttgcaagaagtgcaaccaagccaacatttcactaaaccaccggctcgttttacc
gaagcggctttggtaaaagaattggaaaaacgtggcattggccgtccttctacttacgct
accattatctctaccattcaagaacgtggttacgtgcgaacagaaaatcgccgtttttat
gcagaaaaaatgggggagattgtaaccgatcgtttaagtgaatccttcagtgaactaatg
agttatgatttcactgcgaatatggaagatgcgttggataaaatcgcatcaggttccgtt
aattggaaaaccgaattaaatcagtttttcaaggatttctccaaccaactttctaaagcg
gaattagatgaattagaaggaggaatgcgtccgaatagtttggttgaaaccgatattaaa
tgtcctacttgtggcagaaatatggcgatccgcacggcaagtacaggcgtatttttgggc
tgtaccggttatgcattaccacctaaagagcggtgcaaaaccacgataaatttaattccg
gaaacggaactactgaatatattggatgattcttcagaaaccaaagccttgatggaacgt
aaacgttgtgaaaaatgtggcacggcaatggatagttatgtgattgatgcacatcgtaaa
atccatatttgtggtaataatccgaattgtgatggttatctcattgaagaaggttcgttc
aaaattaaaggttatgacggtccgatcgtagaatgcgataaatgtggtgcggatatgcac
ttaaaattgggtcgttttggtaaatatatgggttgtacaaattgtgataatacccgcaaa
attctaaaaaacggtgaagttgcaccaccaaaagaagagcctgtacattttccggaactt
aaatgtgaaaaatcagatgcctattttgtgttacgtgacggtgcaagcggggtatttatg
tcagcacataatttcccgaaatcccgtgaaacccgagcggcaaaagttgctgaattagcc
ttatatcgtgatcgtttaccggaaaaattagcttatcttgccgatgcaccacaaaaagat
ccggaaggtaacgaggcgattattcgtttcagccgtaaagagaagaaacaatatgttact
tcagaaaaaaacggaaaagccaccaaatggattgtagattttattgatggtaaatgggtt
gaacggaaaaagtaa
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