Rodentibacter abscessus: THUN1654_14600
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Entry
THUN1654_14600 CDS
T10998
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rabs Rodentibacter abscessus
Pathway
rabs03030
DNA replication
rabs03430
Mismatch repair
rabs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THUN1654_14600 (dnaE)
03430 Mismatch repair
THUN1654_14600 (dnaE)
03440 Homologous recombination
THUN1654_14600 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rabs03032
]
THUN1654_14600 (dnaE)
03400 DNA repair and recombination proteins [BR:
rabs03400
]
THUN1654_14600 (dnaE)
Enzymes [BR:
rabs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THUN1654_14600 (dnaE)
DNA replication proteins [BR:
rabs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
THUN1654_14600 (dnaE)
DNA repair and recombination proteins [BR:
rabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
THUN1654_14600 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BFU60623
LinkDB
All DBs
Position
complement(1707343..1710819)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTTPRFVHLRTHSDFSMIDGIAKVKPLVKACAANNMVAMALTDFTNFCGVVRFYGETLSA
GIKPIIGADVRVCSALCGDELFELTLLAKNNVGYKNITLLLSKAYQRGYEDLPYIDQDWL
IDHREGVIILSGGTKGDVGKKLLKENAAETESAVKFYQEFFPDHFYLALTRTGKPDEERY
IKAACHLAEEKGLPLVATNDVVFLKADDAEAHEIRVAIHDGYTLDDPKRPKLYTAQQYFR
SEDEMCALFADIPSALENTLLIAQRCSVTLRLGEYFLPQFPTGELSTEEYLIKKSKEGLE
ERLVFLFPDEKVRSERRGEYDQRLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVADT
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQL
QTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDSEGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMVREGKPMVDIASIPLDDQPSFDLLK
RAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEV
SYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
KQRSVFEKGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAE
FMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHHFSVNENGEIVYGIGAIKGV
GEGPIEALVSARNEGGFFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALAKN
LEDALKASDQHAKDEAMGQSDMFGVLTESHEEVENAYANTPAYTEKQILDGERETLGLYL
SSHPVSRYLKELSHYSSTRLKELVPNRRGQTSTAAGLIVSSRIAMTKKGNRLGIATLDDR
SGRLDITLFGESLEQFGEKLQKDTIVVVSGQVSEDDFSGGLKMTVRDMMTLDEARSRYAK
SLALSLSDEQITPIFIKQLKDMLAPASGGTLPINVYYQSPKGRALLRLGVQWSITPTDDI
LTELVNMLGESAVELEFG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacctcgttttgttcaccttcgcacacacagtgatttctctatgatcgatggg
atcgccaaagtgaaaccattggtaaaggcttgtgcggcaaataatatggtggcgatggcg
ttgacggatttcaccaacttttgcggcgtggtacgcttttatggtgaaaccctttccgcc
ggtattaagccgattatcggtgcggatgtgcgggtgtgcagtgcgttatgcggtgatgaa
ttgtttgaactgaccttgttggcaaaaaataatgtcggttataagaacatcactttattg
ctatcgaaagcttatcagcgggggtacgaggatttgccttatatcgatcaggattggctg
attgatcatcgtgaaggggtcattattttatccggtggaacaaaaggcgatgtaggcaaa
aaattgttgaaagaaaatgccgcagagacggaaagtgcggtcaaattttatcaagaattt
tttcccgatcatttttatcttgccttaacacgcaccggcaagcctgacgaagaacgttac
atcaaagcagcctgccatcttgcagaagaaaaaggtttacctttggtggcaactaatgat
gttgtatttttaaaagcggacgatgcggaagcacacgaaatccgtgtagcgattcacgac
ggttatactttagatgatccgaaacgtccgaaactttacaccgcacagcaatatttccgc
agtgaagacgaaatgtgtgcactgtttgcggatattccttccgcccttgaaaatacctta
ttgatcgcccaacgctgtagcgtaacattacgccttggagaatattttttaccgcaattt
ccaacgggagaattaagtaccgaagaatacttgataaagaaatccaaagaagggttagaa
gaacgtttggtgtttttatttcctgatgaaaaagtgcggtcggaaagacgcggggaatat
gatcaacgtttacaagttgaattggatgttattaaccaaatgggcttccccggatatttt
ttgatcgtgatggagtttattcagtggtcgaaagataacgatattcccgtgggaccgggg
cgtggttcgggagcgggatcactcgtggcgtatgctttgaaaattaccgatcttgatccg
ttagaatttgacttgctttttgaacgtttcttaaatcctgaacgggtttcgatgcccgat
tttgacgtggatttttgtatggacgggcgcgatcgcgtaattgaacacgtggcggacacc
tatggtcgtggggcggtatcgcaaattattactttcggtacgatggcggcgaaagcggtg
attcgggatgttgggcgtgtactgggacatccttacggctttgttgatcgcatttcaaaa
ctcgttcctcctgatccgggaatgactcttgctaaggctttcgaagcagaaccgcagttg
caaacggcttatgacagtgatgaagaggtgcaagcacttatcgatatggcgcgtaaactg
gaaggggtaacgcgaaatgccggtaaacacgccggtggtgtagtgatttcgccgacactc
attacggattttgcgccgctttattgtgatagcgaaggcttacatcccgtcacccatttc
gataaaaacgatgtggagtatgccggcttggtaaaattcgatttccttgggttacgcacg
cttactatcattaaatgggcgttggatatgatcaatgcgcgtatggtgcgtgaaggcaaa
ccgatggtcgatattgcttctattccattggacgatcagccgtcttttgatttattaaaa
cgtgccgaaacgacagccgtcttccagttggaatcgcgcggtatgaaagatttgattaaa
cgccttcaaccggactgttttgaggatattatcgcattggtcgcgttattccgcccgggg
ccgttacaatccggtatggtggataatttcattgatcgtaaacacggacgtgaagaggtt
tcctaccccgatgccaattatcaacacgaaagcctaaaaccgattttagaaccgacttac
ggcattattttgtatcaagagcaagtaatgcaaattgcacaggtacttgccggttatact
ttgggtggcgctgatttattacgccgtgcaatgggtaagaaaaaaccggaagaaatggca
aaacagcgttccgtatttgagaaaggagcgatcaaaaacggtattgacggtgagctttcc
atgaagattttcgacttggtggaaaaatttgccggttacggtttcaataaatcccattct
gccgcttatgccttggtatcttatcaaaccctatggttgaaaacccacttcccggcggaa
tttatggcggcagtaatgacatcggaaatggataacaccgataaaatcgttggcttgtat
gacgaatgtttacgtatgggattgaaagttacgccaccggatattaacgtggggaaacat
cattttagtgtaaacgaaaatggtgaaatcgtttatgggatcggtgcgattaaaggcgtg
ggagagggcccgattgaagcattggttagtgcgcgtaatgagggtggattttttaaagat
ttatttgatttatgtgcgcgagtagatctgaaaaaaatcaatcgccgaacctttgagagc
ctgattatgtcgggggcatttgataaactcggaccgcaccgtgccgcccttgccaagaat
ttggaagatgcactcaaagcatcggatcaacacgccaaagatgaagccatgggacaatcg
gatatgttcggcgtgctgaccgaatctcacgaagaggtggaaaacgcctatgcgaacacg
ccggcttatacggaaaaacaaattttagatggcgagcgcgaaaccttagggctttatctg
agtagccatccggtaagtcgttatttaaaagagctttctcactacagttcaacccgatta
aaagaacttgtgccgaatcgccgcgggcaaactagtacggcagcggggcttattgtgtct
tcgcgtattgcgatgaccaaaaaaggaaatcggcttggtattgccactttggatgatcgc
tccggacgtttggatattactttgtttggcgaaagtttagagcaatttggcgaaaagttg
cagaaagacactattgtcgtggtttcagggcaagtcagtgaggatgatttttccggcggt
ttgaaaatgacggtacgcgatatgatgaccttagacgaagctcgctcacgttatgccaaa
tcgcttgcacttagcctttccgatgaacaaattacaccaatatttatcaagcaattaaag
gatatgcttgcgccggctagtggtggcacattacccatcaatgtgtattatcaaagtccg
aaaggcagagcattattgcgtcttggcgttcaatggtcgattacaccaacagatgatatt
ctcactgaattggtgaatatgctgggggaaagtgcggttgaattggagttcggataa
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