Rodentibacter abscessus: THUN1654_18460
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Entry
THUN1654_18460 CDS
T10998
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rabs Rodentibacter abscessus
Pathway
rabs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rabs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THUN1654_18460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rabs03019
]
THUN1654_18460
03009 Ribosome biogenesis [BR:
rabs03009
]
THUN1654_18460
Enzymes [BR:
rabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THUN1654_18460
Messenger RNA biogenesis [BR:
rabs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THUN1654_18460
Ribosome biogenesis [BR:
rabs03009
]
Prokaryotic type
rRNA helicases
THUN1654_18460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SWC7
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BFU61009
LinkDB
All DBs
Position
complement(2106959..2108776)
Genome browser
AA seq
605 aa
AA seq
DB search
MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQTCIPHLLNGNDVLGMAQTGSGKTAAFA
LPLLAQIDTAAKHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRGTLDLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTATLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDITLDAESYIHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKPINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRRRNERDRRENPRSAERRGERKGYGNPQPMDLYRIEV
GRMDGVDVRHIVGAIANEGDIDSRYIGHIKLYDEHSTVELPQGMPKELLHQFGKTRVLNK
QMQMSFLGAVKSDSNRGGDDFNGKRRGGRGNDFARERGRNERGGRKFNEKSNRSFSDKPR
KARRG
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaaaatcacttttaatgacttgggcttacctgagttcatcttaaaagccgtt
tcagacttaggttttgaaaccccttccccaattcagcaaacttgtattccgcatttgctc
aatggcaatgatgtgctgggtatggcacaaaccggtagcggtaaaaccgctgcatttgct
ttaccgcttctagcacaaatcgatacagcggcaaaacatccgcaaatgttagtgatggca
ccaacccgagaacttgccatccaagtagcggatgcttgtgaacaatttgtgaaatatgcg
catggtacacgcattgttacgctttacggcggtcaacgctatgacattcaacttcgcgct
ttaaaacagggagcgcaagtggttgtcggcacaccggggcgtattctcgatcatattcgc
cgcggtactttagatctatccgagcttcgctttatcgtgcttgatgaggccgatgaaatg
ttacgaatgggctttattgatgatgtagaaaccgtgatggcggaattgccggaaaatcat
caaaccgcacttttctctgcaacgatgccggaacctattcgccgcataaccaagcgcttt
atgaacgatccgaaagaagtgaagatcaaagtcaataacgaaaacgcaccggatattgaa
caaagttgctggtatgtacatggagtgcgtaaaaatgaagcacttcttcgctttttagaa
gtagaagattttgacgcggcgattatcttcgcccgtaccaaaaccgcaacactggatatt
accgaactgcttgaaaaaaacggctttcgttcagccgcacttaatggagatatgacgcaa
caattacgtgaacaaacccttgaccgtttgcgtaacggcagccttgatattgttgtggca
accgatgttgcagcacgcggtattgacattgaacgcatcagcctcgttgtaaactacgat
attacgcttgacgctgaatcttatattcaccgtataggtcgtaccggtcgtgccggtcgt
tcaggccgtgcgctattgtttgtcgaaccacgtgaacgccgcttacttcgcaatattgaa
cacttaatgaaaaaaccgatcaatgaagtggaattgccgaaccatttagtgttgcaagaa
tgtcgccgtaagaaattcgtagcgaaaatcaccaaacaacttgagcatcacgatctggaa
caatatcgcagcctgttggaagatttatttaccgcagatcaagatcaggaagatattgcg
gcagcaatgttaatgttacttcaaggtaaacaaaaacttatccttcctcctgatccacca
atggaaaaacgccgccgtaatgaacgtgatcgccgcgaaaatccacgttctgcggaacgt
cgcggagaacgcaaaggctatggcaatccgcaaccaatggatttatatcgcattgaagtg
ggtagaatggatggcgtggacgttcgtcatattgtgggtgcgattgcaaatgagggtgat
attgatagccgttatattggtcatatcaaactttatgatgaacattccaccgtagaattg
ccacaaggaatgccgaaagaattacttcaccaatttggcaaaacccgcgtgttgaataaa
caaatgcaaatgtcatttcttggtgcggtaaaatctgatagtaaccgtggcggagatgat
ttcaacggtaaacgtcgcggaggacgtggcaatgactttgctcgtgagcgaggacgtaac
gagcgtggaggacgtaaatttaacgaaaaatccaaccgctcttttagtgataaaccacgc
aaagcacgccgtggctaa
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