Rodentibacter abscessus: THUN1654_20030
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Entry
THUN1654_20030 CDS
T10998
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rabs Rodentibacter abscessus
Pathway
rabs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rabs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THUN1654_20030 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rabs03021
]
THUN1654_20030 (rpoD)
Transcription machinery [BR:
rabs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THUN1654_20030 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
U3_snoRNA_assoc
CDC45
Motif
Other DBs
NCBI-ProteinID:
BFU61166
LinkDB
All DBs
Position
2287368..2289254
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AA seq
628 aa
AA seq
DB search
MEQNQQSTAEQYSEQIEQLMELGRTQGYLTYAEINDLLPEDVIDPEYYDKLLQTLQNDAG
IPVLDEAPESDDMMLNETIPDEDAVEEATQILSNVESEIGRTTDPVRMYMREMGTVDLLT
REDEISIAKRIEEGIDEVQTSIAAYPEALSDLLAQYEQVEEGNVRLADLITGFVDPNVVS
EEEAELSDDFDEDDEELDSAADVDDNENEEEDSESGSDDSGDSDNSIDPEVAREKFTQLK
DQHIKTLEAIEKHGRDHKKAQAQIAVLGEIFKQFRLVPKQFDVLVFSMKNMMKRVRGEER
QLQKVLIDIAGMPKDEFELLITKFGSSDVWLDKALKSTKPWAKRLPKYEERIRQAIANLV
AFEQDSKLSVQQMRAICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR
ISRQMLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIED
NTLELPLDSATAQSLKAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSETLRSFLDD
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaatcaacaatctaccgctgaacaatattcagagcaaatagaacaactgatg
gaattaggacgtacgcagggttatttaacttatgccgaaatcaatgacttacttccggaa
gatgttatcgatccggaatactacgataagctcctgcaaactttgcaaaatgatgcaggt
attccggtgttagatgaagcaccggaaagcgatgatatgatgttaaacgagacgattccg
gatgaagatgccgtagaagaagcgactcaaattctttctaatgttgaatccgaaatcggt
cgtacaacggatcctgtgcggatgtatatgcgcgaaatgggtaccgttgatttgcttact
cgtgaagatgaaatcagtatcgctaaacgtattgaagaagggattgatgaagttcaaacc
tccattgccgcttatccggaagcgctaagcgatttgcttgcgcaatatgaacaagtagag
gaaggaaatgttcgtttagccgatcttataacaggctttgttgatccgaatgtggtttcg
gaagaagaggcggaattatccgatgattttgatgaagatgacgaagagcttgattctgcg
gcggatgtggatgataacgaaaacgaagaagaggatagtgaatcgggttctgatgacagc
ggagattctgacaatagcattgatcccgaagtcgcccgtgagaaattcacccaattaaaa
gatcaacatatcaagacccttgaagcgattgaaaaacatggtcgtgatcataaaaaagcg
caagcgcaaattgccgtattgggtgagatctttaaacagttccgtcttgttccaaagcag
tttgatgtgcttgtgttttcaatgaaaaatatgatgaagcgtgttcgtggtgaagagcgt
caattgcaaaaagtattgattgatattgccggtatgccaaaagatgaatttgagcttctg
attaccaaattcggtagtagcgatgtttggttagataaagcgctcaaatcgactaaacct
tgggctaaacggttaccgaaatatgaggagcgtattcgtcaagctatcgctaacttggtc
gcctttgaacaagattcaaaattaagtgttcaacaaatgcgggctatttgtgatgcggtg
gctcgaggcgagcaaaaagcacgtcgtgcgaaaaaagaaatggtggaagcaaacttacgt
ttggtgatttccattgctaaaaagtacaccaatagagggttacaattcttagatttaatt
caagaaggtaatatcggcttgatgaaagcggtggataaatttgaatatcgtcgcggttac
aaattctctacttatgcaacttggtggattcgtcaggcaattacacgctccattgcggat
caggcacgcactattcgtattcctgttcatatgattgaaacgattaacaaattaaatcga
atttctcgtcaaatgttgcaagaaatggggcgtgaagctacaccggaggaactggcggaa
cgtatgggaatgccggaggataaaatccgtaaagtgctaaaaattgccaaagaaccgatt
tcgatggaaaccccggttggtgatgacgacgattcacatttaggtgatttcattgaagat
aacacgcttgagttgccgttagattcagccacggcacaaagtctaaaagcggcaacacac
gaagtgttggaaggattaaccccgcgtgaggcgaaagtattacgtatgcgtttcggtatc
gatatgaatacggatcacacccttgaagaagtcggaaaacaatttgatgtgacacgtgag
cgtattcgtcagattgaagcaaaagccttacgtaaacttcgtcatccaagtcgctcggaa
acattgcgcagtttcttggatgattaa
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