Rhodoferax antarcticus: RA876_04285
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Entry
RA876_04285 CDS
T04655
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
rac
Rhodoferax antarcticus
Pathway
rac02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RA876_04285
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
rac02022
]
RA876_04285
02035 Bacterial motility proteins [BR:
rac02035
]
RA876_04285
Two-component system [BR:
rac02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
RA876_04285
Bacterial motility proteins [BR:
rac02035
]
Pilus system
Twitching motility proteins
RA876_04285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA
Peripla_BP_4
VpsR
MSL2_3
Motif
Other DBs
NCBI-ProteinID:
APW45714
LinkDB
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Position
complement(881881..883368)
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AA seq
495 aa
AA seq
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MTTPASHARILVVDDEPDLRTLYELTLLREGHQVDTAENLQQARALLEAHRFDVMITDMR
LPDGLGMALITDIKAQARNERSIVITAYGSAQNAVEALKAGAFDYLTKPVDLKQFRAVVA
SAVRSVTPGSADEGALFSKPTPGVVAGALGQRALDRLIGHSQCMQQIKTRILKVATSMAP
VMVTGESGTGKELVAYAIHANSHRVKGPWVAVNCGAIPETLLEAEFFGARKGAYTGATQD
REGFFQAARGGTLFLDEIGDLPLPMQSKLLRAIQERRIRPLGSNQEEAVDVRIVSATHRN
LSQEVQNGNFRQDLFFRLNVIDLTIAPLRERAQDLPELCQVLLARIAQESDTPVPTLPVE
VLQELACLTLPGNVRELENLLYRAVALGDGQSLQLDRPVQGTTTLSDSTLDALEFAAAAL
PTREQIAPEPVAGDLQTQLDQLERSLLLQALRATQFNRTAAAARLGLNLRQMRYRMARLK
IDAPGTEDNPDDAAD
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacctgccagccacgcccggattttggtcgtcgacgacgagcccgacctgcgc
acgctgtacgagctgaccctgttgcgagagggtcatcaggttgacacggcggagaacctt
cagcaggcgcgtgcgctgctggaagcgcaccgctttgatgtgatgatcactgacatgcgg
ctgcccgatggcttgggcatggcgctcatcaccgacatcaaagcccaggcccgcaacgaa
cgcagcatcgttattaccgcctatgggtcggctcagaatgcggtggaagcgctcaaggca
ggcgcctttgactacctgaccaaaccggttgatctgaagcagttccgggcggtggtggct
tcggcggtgcgcagcgtgacaccggggtcagcagacgaaggtgccctcttcagcaaaccg
acgccaggcgtggtcgccggggcgttgggccagcgtgcgctggaccggctgatcggacac
tcgcagtgcatgcaacagatcaagacgcgcatcctcaaggtggccaccagcatggcgccg
gtgatggttacgggcgaatctggcaccggcaaagagctggtggcctatgccattcatgcc
aacagtcaccgtgtcaaaggcccctgggttgcggtgaactgcggcgctattcctgagacg
ctgctggaggccgaattttttggtgcgcgcaaaggggcttataccggagccacccaagac
cgcgaaggttttttccaggcggcgcgtggcggcactttgttcctagatgagattggtgac
ttgccgttgccgatgcagtccaaactactgcgcgccatccaggagcggcgcattcgcccg
ctgggctcgaaccaggaagaggcggtggacgtgcgcatcgtcagcgccacccatagaaac
ctgtcgcaagaggtgcagaacggcaactttcgccaagacctgttttttcggctcaacgtg
atcgacctgacgattgcacctctgcgagagcgggcccaagatctgcccgaactgtgtcag
gttttgctggcacgtattgcccaggaatcagacacaccggtgccgaccttgccagttgaa
gtgctgcaggagctggcgtgtctgaccttgccggggaatgtgcgcgaactggaaaacctg
ctgtaccgtgccgtggcactgggagacgggcagagcctgcagcttgatcgcccggtgcaa
ggcacgacaacgctcagcgactccacgctggatgccctcgaatttgctgcggctgcgttg
cccacccgtgaacagatcgcgccggaacctgtggccggcgacttgcaaacgcaactcgac
caactggagcgcagcctgttgctgcaggcgctgcgcgctacccaattcaaccgcactgcg
gcagccgcgcggttgggtttgaatttgcgccaaatgcgctatcgcatggcacggctcaaa
attgatgcccccggcactgaagataacccggatgacgccgccgactga
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