Rhodoferax antarcticus: RA876_04630
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Entry
RA876_04630 CDS
T04655
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA876_04630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rac03019
]
RA876_04630
03009 Ribosome biogenesis [BR:
rac03009
]
RA876_04630
Enzymes [BR:
rac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RA876_04630
Messenger RNA biogenesis [BR:
rac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RA876_04630
Ribosome biogenesis [BR:
rac03009
]
Prokaryotic type
rRNA processing factors
RA876_04630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
APW45765
LinkDB
All DBs
Position
complement(954066..957092)
Genome browser
AA seq
1008 aa
AA seq
DB search
MKRMLINATQAEERRLAVVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEERHGFLPFKEISKTYFQAGVSVSQARIQDVIREGQELVIQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKENMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDVFDQAQ
QFMAHVMPEHAARVKRYRDDAPLFSRFQIEHQIETAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQARLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFASISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDNTASVFCQVPVEVASFLLNEKRTEIAKIELKQRINVLMVPNKSMETPN
YKLERLKHDDPRLDGITASYTMAEEVEDVTAVTRRAQEPTNRQTPVLKGVLPDAPAPIAP
PKPAPVAYAPQPAPVPQPPRAPVAAPAVIEQGFFGWLKNLFAPAPVAAPMTKAPTPPVTA
PPEPRAAQPGGRSTQGRDGSRRNEPRGDRPEGSRAPRTDARNGRTDGRPEGRADGRQDSR
TNRGDRGTRPERGERTDRSERTDRGPRERADNQANAVAHEAVRSEGDLQVNTNGIEANRN
EPRPDRGGRAPRGERRPPRGPRSDAQGRPQDKLEPALDPSTAITQPAPLDVPSNVPADEH
AERDESAPREKRSRDRYPRDRKPRGERTDRPATEAEATDDAQATLPLSAAPDTVEDAAPR
KSYFSTPAASLPAAAAALPQAPETVPAQPAAQAPTAMPTAAAMAPAVGAEVVLALPFAAP
VLLTAAADPLPKAQPSAVVAGGMPKVAAYHLPLEDLAQLAQSSGLTWVLSDADKVAAVQA
AIAAQPEPVRVLRQRPETVTIDDRPLVLVETRLDLRNVTLPFEKSETL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaacgccacccaagccgaagaacgccgcctggcggtggtggac
gggcaaaaactgctcgactacgaaatcgaaatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtgacccgtgtcgagccctctttggaagcttgtttcgttgactat
ggcgaagagcgccacggttttttaccgttcaaggaaatctccaaaacctactttcaggca
ggcgtgtccgttagtcaggcccgcatccaagacgtgattcgtgaaggccaagaactggtc
atccaggttgagaaagaagagcgcggcaacaagggtgcagcgctcaccacctttgtgtca
ctggctggccgctatgtggtgctgatgcccaacaacccgcgcggcggtggcgttagtcgt
cgcattgagggtgaagaccgggccgagctcaaagagaacatggaccagttggaatacccc
aacggcatgagcatcattgcgcgcaccgcgggcattggtcgcagcgcgcccgagttgcag
tgggacttgaactacctgctgaaactctggaccgccattgacggcgccgccaagggtggc
aagggagccttcctgatctatcaggagtccagcctggtgatccgcgccatccgcgactac
ttcaacaacgacattggcgacatccttatcgacaccgacgacgtgtttgatcaggcgcag
cagttcatggcgcatgtgatgccagagcacgctgcccgcgtcaagcgctaccgtgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgaaaccgcttacgcccgcacc
gtgacgctgccgtccggtggcgcgatcgtgatcgaccacactgaagcgctggtgtcggtt
gacgtgaactcagcacgcgccatcaagggcggcgacatcgaagaaaccgccacccgcacc
aacctggaagccgctgacgaagtggcacgccaggcgcgactgcgcgacttgggcggcttg
atcgtgatcgacttcatcgacatggaggaaagcaagaaccgccgcgaggtggaaaaccgc
ctgcgcgacgcgctgcgccaagaccgcgcccgcgtgcagtttgcctccatcagcaagttt
ggcctgatggagatgagtcgtcagcgcctgcgtccggcattgagcgaaggcgcgtctatt
ccctgcccgcgctgcggtggttcgggccacatccgtgacaccgaatccagcgcgctgcaa
attctgcgcgtaatccaggaagagtctttgaaggacaacaccgcctcggtgttttgtcag
gtgccagtcgaagtggcgtcgttcctgctcaacgagaagcgcactgaaatcgccaagatc
gagctcaagcagcgcatcaatgtgctgatggtgcccaacaagtcgatggaaacgcccaat
tacaagttggagcgcctgaaacacgacgacccgcgcttggacggcatcaccgccagctac
accatggctgaagaggtggaagacgtcaccgccgtcacgcgccgtgcccaggagcccacc
aaccggcagacccccgtgctcaaaggcgtgctcccagacgctccggcaccgatcgcgcct
cccaagccagctccagtggcctacgcgccgcagcccgccccagtgccgcagccgcctagg
gccccagtcgccgcgccagcggtgattgaacaaggcttttttggctggctaaaaaacctg
tttgccccagcgccggtcgctgcaccgatgaccaaagcgccgacaccgcccgtcacagca
ccccccgagccacgcgctgcccagccgggtggccgttctacacaaggccgcgacggcagc
cgccgcaatgagccacgcggcgaccgccccgaaggcagccgagccccacgcactgacgct
cgcaatggccgcacggatggccgccccgaaggacgtgctgacggtcgacaagattcccgc
acaaaccgcggtgaccgtggcacccgcccggagcgtggtgaacgcacagatcggagcgaa
cgcactgaccgcggcccacgcgagcgcgccgacaaccaagccaacgctgtcgcgcacgag
gcagtgcggtcggagggcgacctgcaggtcaacaccaacgggattgaggccaatcgcaac
gagccacgcccggatcgcggcggccgtgccccacgcggcgagcgccgcccgcctcgcggt
ccgcgcagtgacgcgcaaggccgcccacaagacaagctcgaaccggcgctagatcccagc
actgccattacccagcccgcaccgctggacgttccgtcgaatgtgccagcggatgagcat
gctgagcgtgacgaatcggccccacgtgaaaagcgttcgcgtgaccggtatccccgcgat
cgcaaaccgcgcggcgagcgtaccgataggccagccactgaagcagaggccactgatgac
gctcaggcaaccctgccactgagtgctgcgcctgacaccgtggaagatgccgcgccccgc
aagtcgtacttcagcacccctgcagcaagcctgcccgcagcggcggctgccctgccgcaa
gcccccgagacggtgccagcgcaacccgctgcccaagcgccaactgccatgccaacagca
gcggcaatggcgccagcggtgggggccgaagtggtgttagcgctgccctttgcagcaccc
gtccttctgacagcagcagctgacccgctgcccaaagcccagccatccgctgtcgtggct
ggcggcatgccaaaggtggcggcctaccacttgcctttggaagacctggcccagcttgcg
caaagcagcggtttgacttgggtgttgtccgacgccgacaaggtagcggctgtgcaagcc
gccattgctgcccagcctgagccggtgcgtgtactgcgccagcgcccagagacagtcacg
atcgatgatcgccctctggtgctggttgaaacgcgcctcgacctgcgcaacgtgactttg
ccgttcgagaagtcagaaacgctctaa
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