Rhodoferax antarcticus: RA876_05395
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Entry
RA876_05395 CDS
T04655
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03420
Nucleotide excision repair
rac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RA876_05395
03430 Mismatch repair
RA876_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rac03400
]
RA876_05395
Enzymes [BR:
rac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA876_05395
DNA repair and recombination proteins [BR:
rac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RA876_05395
MMR (mismatch excision repair)
Other MMR factors
RA876_05395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
T7SS_EccA1_N
Motif
Other DBs
NCBI-ProteinID:
APW45895
LinkDB
All DBs
Position
1102339..1104777
Genome browser
AA seq
812 aa
AA seq
DB search
MFSTMTPQTADAGLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQV
SPGGILAVTFTNKAAKEMMTRLGAMLPVNVRGMWIGTFHGLCNRFLRAHYKLANLPQAFQ
ILDTQDQLSSIKRLYKQFGVDDERYPAKQTQWFIGGCKEDGLRPNAVVARDDETRKKVEL
YQLYEEQCQREGVVDFGELMLRSYELLQGNDPIREHYQRRFRHILIDEFQDTNKLQYAWI
KMLAGTGAHSSVDGAFQPTGCVLAVGDDDQSIYAFRGARVGNMADFVREFGVQHQIKLEE
NYRSGSNILDSANALISHNSKRLGKNLRTAQGPGEPVRVFEASSDFLEANWMVDEMKQLV
REDVERKEIAVLYRSNAQSRVIETSLFNAGMPYKVYGGLRFFERAEIKNALAYLRLLENP
RDDTSFMRAVNFPPRGIGARSLEQLQDVARASGCALSDAVSALTGKAGANIGAFLAGIDV
LREQTQGLSLRDIIAATLDHSGLITHYKADREGADRVENLEELVNAAESFVSIEGFGRDA
VALPVDELGQALTQSPASQGLDLNQPVLDMPAPDADTGETLSPLAAFLTHAALEAGDNQA
QAGQDAIQLMTVHASKGLEFDCVFITGMEEGLFPHENSMTDRDSLEEERRLMYVAITRAR
KRLYLSHSQTRMLHGQTRYNLKSRFFEELPEEALKWITPKQSGFGGHSSGGFGGGFGSGY
ASHSGATGAYPERARGQFGTDYSKYAAPVPPQRQEASGHSFKVGQKLFHAKFGEGKVTAL
EGSGDDARAQINFPRHGVKWLALSVAKLTPLP
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgttttctaccatgaccccccaaaccgctgatgccggtctgctgcataaccttaacccc
gagcagttggccgctgtcacgctgccagccgagcacgcactgatcctcgccggcgccggt
tccggcaagacccgggtgctgaccacccgcattgcctggctgctgcaaaccgggcaggtg
tcgcccggcggcattctggcggtgacgtttaccaacaaggccgccaaagagatgatgacc
cgcctgggtgcgatgctgccggtgaacgtgcgtggcatgtggattggcaccttccacggc
ctgtgcaaccggtttttgcgcgcacattacaagctggcgaatttgccgcaggcttttcag
attctcgacacgcaagaccaactctccagcatcaagcggctgtacaaacagtttggcgtg
gacgacgaacgctatcccgccaaacaaacgcagtggttcattggcggctgcaaggaagac
gggttgcggcccaatgccgtcgtggcccgcgacgacgaaacccgcaaaaaggtcgagctt
taccagctctatgaagagcaatgccagcgcgaaggcgtggtcgattttggcgagctgatg
ctgcgcagctacgagctgctgcagggcaacgacccgatccgcgagcattaccagcggcgc
tttcggcacatcctcatcgacgagtttcaagacaccaacaagctgcaatacgcctggatc
aagatgctggctggcaccggcgcgcacagcagtgtcgacggcgcctttcagcccaccggt
tgtgtgctggcggtgggcgacgatgaccagagcatctacgcttttcgcggcgcgcgggtg
ggcaacatggccgacttcgtgcgcgaattcggcgtgcagcatcagatcaagttagaggaa
aactaccgcagcggcagcaacattctggacagtgccaacgcgctcatcagccacaacagc
aagcgcctgggcaaaaacctgcgcaccgcgcaaggcccgggtgagccggtgcgggtgttc
gaggccagcagcgactttttggaagcgaattggatggtcgacgagatgaaacagctggtg
cgtgaagacgtcgagcgcaaagagatcgccgtgctgtaccgctctaacgcccaaagccgg
gtcattgagacctcactgttcaacgcgggcatgccctacaaggtctacggtggtctgcgg
ttttttgagcgcgccgaaatcaagaacgcgctggcttacctgcgcttgctggaaaacccg
cgcgacgacaccagtttcatgcgtgcggtgaacttcccgccgcgcggcattggcgcgcgc
agcctggagcagttgcaggacgtggcgcgtgccagcggctgcgctttgagcgacgcggtt
agcgcactcactggcaaggcgggcgccaatattggcgcgtttttggcaggcattgacgtg
ctgcgcgagcaaacccagggcctgagcctgcgcgacatcattgccgccacactcgaccac
agcggcttgattacccactacaaggccgaccgcgaaggcgctgatcgcgtggaaaacctg
gaagaactggtcaacgccgccgagagttttgtcagcattgaaggttttggccgcgacgcg
gtagcactgccagtggacgaactcggtcaagccttgacgcaatcccccgcatcacaaggc
ctggacctgaaccagccggtgctggacatgcccgcgcccgatgctgataccggcgaaacc
ctgtcgccgctggccgcatttttgacccacgccgcgcttgaagctggtgacaaccaggcg
caggccgggcaagacgccattcagctcatgaccgtgcacgccagcaaaggcctggagttt
gactgcgtgttcatcaccggcatggaagaaggcctgttcccgcacgaaaactcgatgact
gaccgcgacagcctggaagaagagcgccgcctgatgtatgtggccatcactcgcgcgcgt
aaacgcctgtacctgagccactcgcaaacccgcatgctgcacggccagacgcgttacaac
ctgaaaagccgcttttttgaagagctacccgaagaagccttgaagtggatcacgcccaag
caatccggctttggtgggcacagctcaggcggttttggcggtggttttggttcaggatac
gcttcacattcaggagctactggcgcatatcctgaaagggctagaggccaatttggcact
gattattcaaaatatgccgcacccgtgccgccgcagcgccaggaggcctctggccacagt
ttcaaggtgggccagaagctgtttcatgccaagtttggcgaaggcaaagtaacggcgctg
gaaggcagtggcgacgatgcccgtgcccagatcaacttcccgcgccacggcgtgaagtgg
ctggcgctgagtgtggccaagctgacgccgctgccgtaa
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