Rhodoferax antarcticus: RA876_05875
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Entry
RA876_05875 CDS
T04655
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA876_05875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rac03019
]
RA876_05875
03016 Transfer RNA biogenesis [BR:
rac03016
]
RA876_05875
Enzymes [BR:
rac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RA876_05875
Messenger RNA biogenesis [BR:
rac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RA876_05875
Transfer RNA biogenesis [BR:
rac03016
]
Prokaryotic type
tRNA degradation factors
RA876_05875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
DNA_pol3_a_NI
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
APW45979
LinkDB
All DBs
Position
1205799..1207922
Genome browser
AA seq
707 aa
AA seq
DB search
MTMFKKVSKTFQWGQNTVTMETGEIARQASGAVKLDMDGTVVLATVVARTEGKAGQDFFP
LTVDYLEKAYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTL
SLNPEVDADIAAMIAVSAALSISGVPFSGPIGAARVGYINGEYVLNPGQTLRKSSQMELV
VAGTESAVLMVESEADQLSEEIMLGAVVFGHTQGAIAINAIHDLVRDAGKPVWDWKPAAK
DEALIAKIDVLAKDKLVAAYQIRNKQARTQACRATYAEVMAALKAEGVAFDSVAIEGLLF
EIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSALFTRGETQALVVTTLGT
ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAVLPSK
EDFPYTMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKDDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMT
EAMAEAKTEVSNFAPRLFTMKINPEKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIA
SSDPAKAEEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVMETDEKGRVKLSMKALLERPVQGGNDNRA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgttcaaaaaagttagcaaaaccttccaatggggtcaaaacacagtcaccatg
gaaactggcgaaatcgcccgtcaagccagcggcgcagtgaagcttgacatggacggcact
gtggtgttggctaccgtggtggccaggaccgaaggcaaagccggtcaggatttctttcca
ctgaccgttgattaccttgaaaaagcctacgctgcaggcaagattccgggcagcttcttc
aagcgtgaaggccgccccagcgagtttgaaacactcaccagccgcctgattgaccgccca
atacgcccattgtttcccgaaggcttcttcaacgaagtgcatgtggtggtgcacaccctg
tcgctcaaccctgaagtcgacgccgacattgccgccatgattgcggtgagcgcagcgctg
tcgatcagcggcgtgccgttcagcggcccgattggtgctgcccgcgtgggttacatcaac
ggcgaatatgtgcttaacccgggccaaaccctgcgcaaatccagccagatggaattggtg
gtggcaggtaccgaatctgccgtactgatggtcgagtctgaggctgaccagttgtccgaa
gaaatcatgctcggcgcggtggtgtttggccacacccaaggtgcgattgccatcaacgcg
atccacgacctcgtgcgtgatgctggcaagccggtgtgggactggaagcccgctgccaaa
gacgaagcgctgatcgccaagatcgacgtactggccaaggacaaactggtggccgcctac
caaatccgcaataagcaagcccgcacccaagcctgccgcgcgacctacgctgaagtcatg
gccgcactgaaggccgaaggcgtggcgtttgattcggtggctatcgaaggcctgctgttt
gaaattgaagcgaagattgttcgtggccagattctggcgggcgagccgcgtattgacggt
cgtgacacacgcaccgtgcgtgctatcgaaatccgcaacggcgtgctgccgcgcacccac
ggttccgccctgttcacgcggggtgaaacccaggcgctggtggtgaccacgctgggtacc
gagcgtgatgcccagcgcattgacgccttgagcggcgactacgaagaccgcttcatgctg
cactacaacatgcctccctttgccaccggcgaaaccggccgtgtgggcacgcccaagcgc
cgcgaaattggtcacggccgtctggccaagcgcgcgctgattgccgtgttgccgagcaag
gaagacttcccctacaccatgcgtgtggtgtctgaagtgaccgaatccaacggttcgtcg
agcatggcctcggtgtgcggcggctgcctgagtctgatggacgctggcgtgcctttgaag
gcgcatgtggccggcattgccatgggcctgatcaaggacgacaaccgctttgccgtgctg
actgacatcctgggtgatgaagaccacctcggcgacatggacttcaaggtggccggtacc
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaagtcgctttggcacaagccaaagaagcgcgtatgcatatcctgggcaagatgact
gaagccatggcagaggccaagaccgaagtctccaatttcgcgccgcgtctgttcaccatg
aagatcaacccggaaaagatccgcgacgtgatcggcaagggcggctcggtgatccgtgcg
ctgaccgaagaaaccggcacccagatcaatatcgacgaagacggcaccatcaccatcgca
tcaagtgacccggccaaagccgaagaagccaagcgccgcattgagcagatcaccgctgaa
gttgaaatcggcaagatttatgaaggcccggtggtgaagattttggacttcggcgcgctg
atcaacctgctgcccggcaaagatggcctgctgcacatcagccagatcgcccatgaacgc
gtcgagaaggtgactgactatttgtcagaaggccagatcgttaaggtcaaggtcatggaa
accgacgaaaaaggccgtgtcaagctgtcgatgaaagccttgctggagcgcccagtccaa
ggcggcaacgataatcgggcttga
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