Rhodoferax antarcticus: RA876_11505
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Entry
RA876_11505 CDS
T04655
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA876_11505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rac03019
]
RA876_11505
03016 Transfer RNA biogenesis [BR:
rac03016
]
RA876_11505
Enzymes [BR:
rac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RA876_11505
Messenger RNA biogenesis [BR:
rac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RA876_11505
Transfer RNA biogenesis [BR:
rac03016
]
Prokaryotic type
tRNA degradation factors
RA876_11505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
APW48392
LinkDB
All DBs
Position
complement(2381809..2384109)
Genome browser
AA seq
766 aa
AA seq
DB search
MKNIKQTSALLEEVEGVVQGHRDGHGFVIRDDGESDIYLPPNEMRAVLHKDRVKVRVVRS
DRKGRPEGRVLEIVERGSQVIIGRLLHESGIWIVAPEDKRYGQDIMIPKAATGAARAGQV
VVVELTEPPSLFGQPIGRVKEVLGEIDDPGMEIEIAVRKYSVPHEFSEACIAQSRTLPDQ
VRPQDKRQRVDLTDVPLVTIDGEDARDFDDAVYCEPTKIGKGRAATSGWRLLVAIADVSN
YVENGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVERLCMVCDMLVSEDGE
VSAYQFYPAVMFSHARFTYTEVAAILANTRGPEALKRKERIDDLINLHDVYHALLKSRAR
RGAVDFETVETQIVCDEAGHIEKIVPRTRNDAHKLIEEAMLAANVCSADFIAQSKHAGLY
RVHEGPTPEKIEVLRNYLKVTGVGLSISDNPSPGDFQAIANATKERPDAAQIHMMLLRAM
QQAMYTPVNNGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILAKTKYVLPVLPTPGEAH
AKLSKRLEKNLAAKVAEPGQKPRKLSADMLAWQSAGLHCSANERRADEASRDVEAWLKCK
YMREHLGEEFSGVVSSVTSFGLFITLDAMYVEGLVHITELGGEYFRFDEVRQELRGERTG
IRYALGSRVRVQVSRVDLDGRRIDFRLVQEGEALSPRPVKDKESLREDDQSAGFDADSDA
LPPGRRSHKISEPLARAPKPAAPGGKSSRRTPAATKPKEKSGKKRR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atcaaaaatattaagcaaaccagcgccttgctggaagaagttgaaggagttgttcaaggt
catcgtgatggccatggcttcgttattcgcgacgatggcgagtcagatatctatctgccg
cccaacgaaatgcgcgccgtgctgcacaaggatcgcgtcaaagtacgcgtcgtgcgcagc
gaccgcaagggcaggcccgaaggtcgggtgctggagattgtcgagcgcggcagccaagtc
attattggccgcctgctgcacgagagcggcatctggatcgtggcgcctgaagacaagcgt
tatggccaggacatcatgatccctaaagccgccacaggcgcagcgcgggccggtcaggtg
gtggtagtggaactcaccgagccgccatcactgtttggtcaaccgatcggtcgcgtcaaa
gaagtgcttggcgaaattgacgaccccggcatggagattgagatcgcggtgcgcaagtac
agcgtgccgcacgagttttctgaggcgtgtattgcccaatcgcgcaccttgcccgaccaa
gttcgcccgcaagacaagcgccaacgcgtggacctgaccgatgtgccgctggtcaccatc
gacggcgaagacgcgcgtgactttgacgatgccgtctattgcgaacccaccaagatcggt
aagggcagggcggctacatctggctggcgcttgctggtggccattgccgatgtgagcaac
tacgtggaaaacggttcagcgatcgacgtggacgcgtatgaccgcgccaccagtgtgtat
ttcccgcgccgcgtcatcccgatgctgcccgagaagctttccaacggcttgtgttcactg
aaccccgatgtagagcgcctgtgcatggtctgcgacatgctggtgtcagaggacggcgag
gtctcggcctaccagttctacccggccgtgatgttcagccacgcgcgcttcacttacacc
gaagtggcggctattttggccaacacgcgtggcccggaggcgctcaaacgcaaggagcgc
attgacgatttgatcaacctgcacgacgtgtaccacgccctgctcaaatcccgcgcgcgc
cggggtgcagtggattttgagacggtcgagacacagattgtttgcgacgaagctgggcac
atcgaaaaaattgtgccgcgcacccgcaacgatgcccacaagctgattgaagaagccatg
ctggcggccaacgtgtgcagcgccgacttcattgcccaaagcaagcatgcgggcctgtac
cgtgtgcacgaaggccctacgccagaaaaaatcgaggtgctgcgcaactacctgaaggtg
actggcgttggtctgagcatcagcgataacccgtctccaggcgactttcaggccatcgcc
aacgctaccaaagagcgcccggacgctgcccaaatccacatgatgctgctacgcgccatg
cagcaggcgatgtacaccccggtgaacaacggccactttggtctggcgtttgaggcttac
acccacttcaccagcccgatccggcgctaccccgatttactggtgcatcgggtcatcaag
gcaattctggccaaaaccaaatatgtcttgccggtgttgcccacaccgggtgaggcgcat
gccaagctgtcaaaacggttggagaagaatctggccgccaaggtggctgagcctggccag
aagccgcgcaaactcagtgctgacatgttggcctggcagtcggccggactgcattgcagt
gccaacgagcgccgcgccgacgaagccagccgcgacgtggaggcctggctcaagtgcaag
tacatgcgcgagcatctcggtgaagagttctctggcgtggtcagttcggtcaccagtttt
ggcttgttcatcacgctggacgcgatgtacgtggaaggcctggtgcacatcaccgaactg
ggcggcgagtatttccgttttgacgaggtacgccaagaactgcgcggcgagcgcaccggc
attcgctatgcgctgggtagccgggtgcgcgtgcaggtcagccgcgttgacctggacggg
cggcgtattgattttcggctggtgcaagagggtgaagcgctttcgcctcggcctgtcaaa
gacaaagagtctctgcgtgaagatgaccagtcggcgggttttgatgcagattcagacgcc
ctgccacccgggcgacgcagccacaagatatctgagccactggcgcgcgcgccgaagcct
gccgcacccggtggcaagtcttcacggcgcacgcctgctgcaactaagcccaaggaaaaa
agtggtaaaaaaaggcgatag
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