Rhodoferax antarcticus: RA876_15560
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Entry
RA876_15560 CDS
T04655
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03030
DNA replication
rac03430
Mismatch repair
rac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA876_15560
03430 Mismatch repair
RA876_15560
03440 Homologous recombination
RA876_15560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rac03032
]
RA876_15560
03400 DNA repair and recombination proteins [BR:
rac03400
]
RA876_15560
Enzymes [BR:
rac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RA876_15560
DNA replication proteins [BR:
rac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RA876_15560
DNA repair and recombination proteins [BR:
rac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RA876_15560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
PAS_4
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
APW47537
LinkDB
All DBs
Position
complement(3218769..3220934)
Genome browser
AA seq
721 aa
AA seq
DB search
MKINRKLYVSLALLGGVTLVWIVMTIGLVLLTLAPQQRVVVSELLMPRLILVVLTWVFGL
GLMAATLRWLIQRYSTAPALLLEQTRTLLASPKALPMNHQGTKETKELADVVYQLAFQRD
QLRDEVSTQVALASQGVQQEKDRLAALMAELTQSVVVCNLDGRILLYNNRARLQFKAMSQ
SPSLAGGAELVGIGRSIYAVFDRALVAHALDSIQQRLLRGAANPSAQFVTSTAAGQLLKV
QMAPVRTSNTDDANNVLNGFVLMLENVTRAFDEENRRDQTLHGLTQGCRASLAGMRSALA
TLEASEMTGEPRTRQRQVLHDEMASMSRRITDLDKEAMHGLKTRWPMEDMLGTDVLLVTQ
HRIEKYCQRDVSLEILDDSIWLRVDSYSLIQALVYLAARLVDEFDVKFLRLRLLSEDGIA
KLDLIWTGQVMSTETVMTWEMDSMQMGAESSPLSVRDVVERHSGELSFGRERVRHEAFYR
FALPQVSVQDQPDAASLLHSDSRPEYYDFDLFQTSDQTSALDDRPLSELIYTVFDTETTG
LNPSEGDEIIQIGATRCVNGRLLRQESFEQLVNPGRIIPAATITIHGITQEMVSGKPPIT
AVLPAFHTFVTDTVLVAHNAAFDMKFLQMQEKATGLKFDNPVLDTLLLSAVVHPAQESHR
LEEIAGRFNITVLGRHTALGDAFVTAEVWLRLIPLLQAMGIHTLRQAREAAQKTYYARLK
Y
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaaccgcaagctgtatgtttcactggccttgctgggcggcgtgaccctggtg
tggatcgtgatgaccatcggcttggtgctgttgaccctggcaccgcaacagcgggtggtg
gtcagtgagctgttgatgccgcggttgattctggtggtgctgacctgggtcttcggcctg
ggcctcatggccgccaccttgcgctggctgattcagcgttattcaaccgcaccggcgctt
ttgctggagcagacgcggacgttactggcgtctccgaaggccttgcccatgaaccaccag
ggcacgaaggaaaccaaagaactggctgatgtggtgtaccagctggctttccagagagac
cagttgcgcgatgaagtcagtacccaggtggccctggccagtcagggtgtgcagcaggaa
aaagaccgcctcgccgcgctgatggccgagctgacgcaaagtgtggtggtgtgcaacctg
gacggccgtatcctgctgtacaacaaccgcgcacggctgcagttcaaagccatgtctcaa
tcaccgtcactggccggcggcgccgaactggtgggcatcggtcgctccatttacgcagtg
tttgaccgggcgctggtggcgcacgcgctggacagcatccagcagcgcctgttgcgcgga
gctgccaacccgtcggcgcagtttgtcaccagcacggccgcaggccaactgctgaaggtg
cagatggcgccagtgcgtaccagcaacaccgacgacgccaataacgtactcaatggattt
gtgctgatgctggaaaacgtcacccgcgcgtttgacgaagaaaaccgccgcgaccagacg
ctgcatggcctgacccagggttgccgtgcctcgctggcgggtatgcgcagcgcactggcc
accctggaggcctcagagatgactggcgagccgcgtacgcgccagcgccaagtgctgcac
gatgaaatggccagcatgtcgcggcgcatcaccgatctggacaaagaggccatgcatggc
ctgaaaactcgctggccgatggaggacatgttgggcacggatgtgctgctggtcacgcag
caccgcattgaaaaatattgccaacgtgatgtgtcgctggaaatcctcgacgacagcatc
tggctgcgggtggacagctacagcctgattcaggcgctggtgtatctggctgcgcggctg
gtggatgagtttgacgtgaagttcctgcgcctgcggctgttgtctgaggacggtattgcc
aagcttgatctgatctggaccggccaggtgatgagcaccgaaaccgtgatgacttgggaa
atggacagcatgcagatgggcgccgagagcagccccttgagcgtgcgcgacgtggtggag
cgccacagtggcgagctgagttttggccgtgagcgggtgcgccatgaggctttttaccgg
tttgccctgccgcaagtcagcgtccaggaccagccagacgccgccagcctgctgcacagc
gacagccgccccgaatattacgactttgatctgtttcagacatccgaccagaccagcgcg
ctggacgaccggcccctgagtgagctgatctacaccgtgtttgacaccgaaaccaccggc
ctgaacccctctgaaggtgatgaaatcatccagattggtgccacccgctgcgtcaatggc
cggctgttgcgccaagagagttttgagcaactggtcaaccccgggcgcatcattccagca
gccaccatcaccattcacggcatcacccaggaaatggtcagcggcaagccgcccattacc
gccgtgctgcccgcgtttcatacctttgttactgacacggtgctggtggcacacaacgcc
gcctttgacatgaaattcttgcaaatgcaggaaaaagccaccgggctgaagtttgacaac
ccggtgctcgacacgttgctgctctcggcggtggtgcacccggcgcaagagtcgcaccgg
ctggaggagattgccgggcgtttcaacatcaccgtgctgggccgccacaccgcgctgggt
gatgcgtttgtcaccgctgaggtctggctgcggctgattccgctgctgcaagccatgggc
attcacactttgcgtcaggcgcgtgaagcggcgcaaaaaacctattacgcgcgcttgaag
tactga
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