Rhodoferax antarcticus: RA876_16260
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Entry
RA876_16260 CDS
T04655
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rac
Rhodoferax antarcticus
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rac03016
]
RA876_16260
Enzymes [BR:
rac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RA876_16260
Transfer RNA biogenesis [BR:
rac03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RA876_16260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
ProQ_C
Motif
Other DBs
NCBI-ProteinID:
APW47644
LinkDB
All DBs
Position
3347897..3350068
Genome browser
AA seq
723 aa
AA seq
DB search
MHLLFEETGKFLAGRILSEADTSAQVELDSGKRVKVKAANILLKFDKPEPAQLMAAAQGV
ASGIELDMAWEFAPEEEFGFAELARDYFSEQATLGEQAGMLLALFEAPHYFRRAGKGRFR
KASKDILALALAAIEKKKQLALQVEAWVKELSSGVCPQAIRDQLYKILFKPDKNAPEYKA
VVEASRATHLGPLDLLIKAGAIDSPYQFHWRRFLLENFPKGVGFPKLEAPRITAELPLSS
ARAFSIDDSATTEIDDALSVQGLGSGTVLLGIHIAAPGLAIQPGGAIDQLGRARLSTVYM
PGYKITMLPDEVVQAYTLMQGQDCPAVSLYVTLDEATLEIKSSETKLERVHIDSNLRHDQ
LDNIVTTAWLEDPDFKHEIDPQPLSDKREQLSFLYRLAKDLKAKREVVRGKPENFNRPDY
NYRLIRGTGPSQGANAPVGGSEAHEMASVGANKLWTDGAEPQGSEQVEISVRQRGAPLDL
IVSEAMILANSTWGNWMAELGVPGIYRSQASLAIGVKVRMGTKAMPHAGLGVKSYAWSSS
PLRRYTDLVNQWQIIACARHGKTAALAAPFKPKDAELFSIISSFDATYAAYNGFQNAIER
FWILKYIQQQGITEFEATLFKENLVRADHLPLVLPVAGAQSLPRGARVLVRLGDIDEVSL
DIHGTVIQRLDGGEDDKSGSGAPGTTEDESEDDTLSGPIAIAVDLSDADTASEAAKPGDN
CAP
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcacttattatttgaagagacaggcaaattcctcgctggccgaatcctctctgaggca
gatacctcggcccaggtggagctcgacagcggcaaacgcgtcaaggtcaaggcggccaac
atcctgctgaaatttgacaagcccgaacccgcccagctgatggccgccgcgcaaggcgtg
gccagcgggattgagctggacatggcctgggaattcgccccggaagaagaatttggcttt
gccgagctggcacgcgactatttttccgaacaagccaccttgggcgagcaggcgggcatg
ttgctggcgctgtttgaagccccacattactttcgccgcgcgggcaaagggcgctttcgc
aaggcctccaaagacattctggcgctagccctggccgccatcgagaagaaaaaacagctt
gccctgcaggttgaagcctgggtcaaagagctcagcagcggtgtgtgcccgcaggctatt
cgcgaccagttgtacaaaattctgttcaagcccgacaaaaacgcgcctgagtacaaggcc
gtggtggaagcctcgcgggccacccatctgggcccgctggacctgctgatcaaagccggg
gcaattgactcgccctaccagttccactggcggcgctttttgctggaaaacttccccaaa
ggggttgggttcccgaaacttgaggcgccccgcatcaccgccgagctgccgctgtccagc
gcgcgggccttttcgattgacgactcagccaccaccgagatcgacgacgcgctgtcggtg
cagggcctgggcagcggcacggtgttgctgggcatccacatcgccgcacccggcctggcc
atccagcccggcggcgccattgaccaacttggccgtgcgcgcctgtccacggtctacatg
cccggctacaagatcaccatgctgcccgacgaggtagttcaagcctatacgctgatgcag
ggtcaggactgcccggccgtgtcgctgtatgtcacgctggatgaggccacgctggagatc
aaaagcagcgaaacgaagctggagcgggtgcacattgacagcaacttgcgccatgaccag
ctcgacaatatcgtcaccaccgcctggctggaagacccagactttaagcatgaaatcgac
ccgcagcccttatcagataagcgcgagcagctctcatttttataccgcctggccaaagac
ctgaaagccaagcgcgaagtggtacgcggcaagcccgagaacttcaaccggcccgattac
aactaccgtctcattcgcggcaccgggccgtcccaaggcgcgaacgcccccgtggggggc
agcgaagcacatgaaatggcaagcgtgggggctaacaagctctggactgacggtgccgag
ccgcaaggcagcgagcaggtcgagatcagcgtgcgccagcgcggcgcgccgctggacttg
atcgtctctgaggcgatgattctggccaacagcacctggggcaactggatggccgagctg
ggcgtgcccggcatttaccgcagccaggccagtctggccattggcgtgaaggtgcgcatg
gggaccaaagccatgccgcacgcggggcttggtgtgaaaagttatgcctggagcagctca
ccgctgcgtcgctacaccgatctggtgaaccagtggcagatcattgcctgcgcccgccac
ggcaagaccgcggcgctggcggcaccgttcaagccaaaagatgccgagctgttttcgatc
atctccagttttgatgccacttacgccgcttacaacggcttccagaacgcgatagaacgc
ttctggattctgaaatacatccagcagcaaggcattaccgagttcgaggccacgctgttc
aaagaaaacctggtgcgcgccgatcatctgccgctggtgctgccggtggccggggcgcaa
agcttgccgcgcggcgcgcgggtgctggtgcgtctgggcgatattgacgaggtgtcgctg
gacatccacggcaccgtcatccagcggcttgatggcggcgaagacgacaagtctggctca
ggcgctcccggcaccacagaagacgagtcagaagacgacaccctgtctggtccgatcgcg
attgcggtggacctcagcgatgccgacacagcttctgaggcggccaagcccggcgataat
tgcgccccgtga
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