Rahnella aceris ZF458: JHW33_05610
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Entry
JHW33_05610 CDS
T07163
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
race
Rahnella aceris ZF458
Brite
KEGG Orthology (KO) [BR:
race00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
race03016
]
JHW33_05610
Enzymes [BR:
race01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JHW33_05610
Transfer RNA biogenesis [BR:
race03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JHW33_05610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
QQN36109
LinkDB
All DBs
Position
complement(1243436..1245379)
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AA seq
647 aa
AA seq
DB search
MFQDNPLLAQLKQQLHSQTPRVEGIVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
IASLQTEKEREVVQPETLVEPFLSRFVGRVTKKDDRLSIIPDHPLLRDAIQCRVARNINH
EVSDGDWCVAEMRRHPLKEGDHSFQAEITEWITTGADDLAPWWVTLARHNLEREAPKSDI
AELRDEGLTREDLTALPFVTIDSGSTQDMDDALYVKDNGDGTLQMTVAIADPTAYVSEGS
ELDNIAKKRAFTNYLPGFNIPMLPRELSDDICSLWPDVSRPVLACSVTVGADGTLGSDIR
FFAATIESKAKLAYDDVSDWLEADEKSEWQPASEVIASQIRLLKRVCDVRSAWRTEHALV
FKDRPDYRFVLGEKGNVLEIIAEHRRIANRIVEESMIAANVCAAIALRDSLGFGVYNVHT
GFDPLLVENAVTVLQANDVEANAEELLTLPGFCALRRKLDALPTQFLDSRIRRFQTFAEI
STTPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAMILQQSAEKPQDDMTIQLAERRRA
NRMAERDVGDWLYARYLEDKVGTDVKFGAEIIDVTRGGLRIRLQDIGAVAFIPAPFLHSV
RDELVCSADTGTVLIKGEVAYRQSDIIEVNIAEVRMENRNVIAKPAV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctcgcgcagctaaaacagcaacttcactctcagactccg
cgtgtcgaaggcatcgtaaaaggcactgagaaaggctttggctttcttgaagtagacggc
caaaaaagctatttcattccgcctccgtacatgaaaaaagtcatgcacggggatcgcgtt
atcgcttccctgcaaaccgaaaaagagcgtgaagtcgtccagccggaaacattggttgaa
ccttttctcagccgttttgttggccgcgtaacgaagaaagacgaccgtctttctatcatt
ccggatcatcctttattacgtgatgctattcagtgccgcgttgcccgcaacatcaatcat
gaagtgagtgatggcgactggtgtgtggctgaaatgcgccgtcacccgctgaaagaaggc
gaccacagcttccaggctgaaatcaccgaatggatcaccaccggcgccgacgatcttgcg
ccgtggtgggtcacgctggcacgtcataaccttgaacgtgaagcgccgaaatctgacatt
gccgaactgcgcgatgaaggcctgacccgcgaagacctgaccgccctgccatttgtcact
atcgacagcggcagtacgcaggacatggatgacgcgctgtatgtgaaagacaacggcgac
ggcaccctgcaaatgactgtcgcaattgctgacccgacggcttacgtcagcgaaggcagc
gagctggacaatattgcgaaaaaacgcgcattcaccaactatctgccgggcttcaacatc
ccgatgctaccgcgtgaattgtccgatgatatctgttccctgtggccggacgtcagccgt
ccggttctggcgtgttctgtcacagtaggcgcagatggcacactgggcagcgacattcgt
ttcttcgcggcgactatcgagtcgaaagccaaactggcttatgacgacgtgtctgactgg
ctggaagcggatgagaaaagcgaatggcaaccggccagcgaggtgatcgcctcacagatc
cgcctgctcaaacgcgtctgtgacgtgcgcagcgcatggcgtaccgaacatgcattggta
tttaaagaccgtcctgattaccgcttcgtgctgggtgagaaaggtaacgtgctggaaatc
atcgccgaacatcgccgcattgctaaccgcatcgttgaagaatcgatgattgccgccaac
gtctgtgccgctatcgccttgcgcgacagcctcggtttcggcgtttataacgtgcatacc
ggttttgatcctctgctggtggaaaacgcggtcaccgtgctgcaggccaatgacgttgaa
gccaacgctgaagaactgctgaccctgccgggcttctgcgctctgcgccgtaagcttgat
gcattgccaacccagttcctcgacagtcgcatccgtcgtttccagacctttgcagaaatc
agcaccactccggggccgcacttcggtctggggctggaagcttatgcgacctggacatca
cctatccgtaaatacggcgacatggtgaaccaccgtttgttgaaagcgatgatcctgcaa
cagtctgctgaaaaacctcaggacgacatgaccattcaactggcagaacgccgtcgtgcc
aaccgcatggccgagcgcgatgtcggtgactggttgtatgcccgttacctggaagataaa
gtcggcactgacgttaaattcggtgctgaaattatcgatgtcacccgcggcggcctgcgc
atacgtctgcaagatatcggtgccgtggcgttcatccctgctccgttcctgcacagcgtg
cgcgacgaactggtgtgcagcgccgataccggtactgtcctgattaaaggcgaagtggcc
taccgccagagcgacattattgaggtgaacattgctgaagttcgcatggaaaaccgcaat
gtgatcgccaaaccggcagtctag
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