Rahnella aceris ZF458: JHW33_08875
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Entry
JHW33_08875 CDS
T07163
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
race
Rahnella aceris ZF458
Pathway
race03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
race00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JHW33_08875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
race03400
]
JHW33_08875 (mfd)
Enzymes [BR:
race01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JHW33_08875 (mfd)
DNA repair and recombination proteins [BR:
race03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JHW33_08875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF6007
RecG_dom3_C
OAR
Motif
Other DBs
NCBI-ProteinID:
QQN36705
LinkDB
All DBs
Position
1958282..1961725
Genome browser
AA seq
1147 aa
AA seq
DB search
MSQDYRYSLPERPGDNRLLGQLTGSACALECAQISERHTGPILLIAPDMQNALRLRDEIQ
QFTDNKVLSIADWETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPH
EFLHGHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRIFDVDTQRTLSEVEHINLLPAHEFPTDKNAIELFRSQWREKFEVRRD
AEHVYQQVSKGTFPAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDAC
QRYESRRVDPMRPLLEPENLWLRVESLFTELKAWPRVQLRTDSLPKKAANTNLSYEKLPD
LSVQPQNKAPMDNLRRFNESFAGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEEADI
AGRYIMIGACERGFLDADKQLALICESDLLGERVARRRQDSRRSINTDTLIRNLAELRPG
QPVVHVEHGVGRYLGLTTLETGGITAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESA
PLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKSGFAFKHDKAQYQLFCQAFPFE
TTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTL
LAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGTHKLLQTDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRMAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKASQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMTSIGFSLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEDFIPDV
NTRLSLYKRIASAKTEGELDELRVELIDRFGTLPDGARNLLLIAVLRLKAKELGIRRIEG
NERGGFIEFGDKNRVDPGFLIGLLQKQPQVYRLDGPTKLKFVLDLTDRPKRLKFVGDMLS
EFTEHLI
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagattatcgttattcgttgcctgaacgcccgggcgacaaccgcctgttaggc
cagcttacaggctccgcctgcgcgctggaatgcgcccaaatcagtgaacgccatacaggc
ccgatcctgctgattgcgcctgatatgcaaaatgccctgcgcctgcgcgatgaaattcaa
cagtttactgacaacaaagtcctgagtattgcggactgggaaacgctaccttacgacagt
ttttctccacatcaggaaattatttcttcacgcctttccagtttgtatcagcttcctact
atggaacgcggcatcattattctgccggtgaatacgctgatgcaacgcgtatgcccgcac
gaattcctgcacggtcacgcgctggtgatgaagaaaggtcagcagctttcgcgcgataaa
ttgcgtgcacagctggaacaggccggttatcgcagcgtagatcaggtgatggagcacggc
gagtttgccacccgtggcgctctgcttgatttgtatccgatgggcagcgaagaaccttat
cgcattgatttctttgatgatgaaatcgacagcctgcgcattttcgatgtggatacccag
cgcacgctgagtgaagtggaacatatcaatctgctacccgcgcacgaatttccaaccgat
aaaaatgccattgaactgttccgcagccaatggcgcgagaagttcgaagtacgtcgcgat
gccgaacacgtttatcagcaggtcagtaaagggaccttccccgccggtatcgaatactgg
cagccgttgtttttcagtcagccgctgaccacgctgttcagctatctgccggaaaacacg
ctggtattgaataccggcgatctcgaagccgccgctgagcgcttctggcaggacgcctgc
cagcgttacgaaagccgccgtgtcgatccgatgcgtccgctgctcgagccggaaaatctc
tggctgcgtgtggagtcgctgtttaccgagctgaaagcctggccacgtgttcagctgcgt
actgattcgctgccgaagaaagccgccaataccaatctgagttacgaaaagctgccagat
ttatccgttcagccgcagaacaaagcgccgatggataacctgcgtcgctttaatgaatcc
tttgccggcagcctggtattctccgtagaaagtgaaggccgccgcgaaacgcttcaggat
ttgctggcacgcatcaagctgatgccgacgcttatcacccggattgaagaagctgatatc
gccggtcgttacatcatgatcggcgcgtgcgaacgtggttttctggatgcggataaacag
ctggcgctgatctgtgaaagcgatctgcttggtgaacgcgtggcgcgtcgccgtcaggac
agccgccggtcgatcaacaccgatacactgatccgtaatctcgccgaactgcgtcccggc
cagccggtagtgcatgtcgaacacggcgtgggccgttatctcgggctgacaacgcttgaa
accggcggcatcactgccgaatacctgatactgacctacgccggtgaagacaaactgtat
gtgccggtatcatcgctgcatctcatcagccgctatgccggtggcgcggatgagagcgcg
ccgctgcataaactcggtggtgaagcctggtcaaaagcgcggcagaaagcggccgagaaa
gtgcgcgatgtcgctgcggaactgctggatatctacgcccagcgcgaagccaaaagtggt
ttcgcgtttaagcacgacaaagcacagtatcagctgttctgtcaggctttcccgtttgaa
accacgccggatcaggcacaggccattaacgccgtactgactgacatgacccaaccgctg
gcgatggaccggctggtatgcggcgacgtcggtttcggtaaaaccgaagtggcgatgcgc
gcagccttcctcgccgtttccaacaataagcaggtggccgttctggtaccgaccaccctg
ctggcacaacagcacttcgataacttccgcgaccgcttcgccagctggccagtgcgcatc
gaaatgatgtcgcgtttccgcagcgccaaagaacaaaacgtcgtgctggaagatgcggtt
gaaggcaaagtcgatattattatcggcacacacaaactgctgcaaaccgatctacgctgg
aaagatctgggactgctgattgtcgatgaagagcaccgtttcggtgtacgtcataaagag
cgcatcaaagcgatgcgtgcagacgtagatattcttaccctgaccgcaacgcctatcccg
cggacgctgaacatggccatgagcggcatgcgcgacctgtcgattattgccacaccgcct
gcacgtcgtatggcggtgaaaacctttgtgcgcgagtacgacagtctggtcgtgcgtgag
gcaatcctgcgtgaaattctgcgcggcgggcaggtttattatctctacaacgatgtcgag
aatatcgagaaagcctcgcagcggctggccgaactcgtgccggaagcgcgcattgccatc
ggccacggtcagatgcgtgaacgcgacctcgagcgtgtgatgaatgatttccatcaccag
cgtttcaacgtgctggtgtgtaccaccattatcgaaaccggtatcgatatcccgacggcg
aacacaatcattattgagcgcgccgaccactttggtctggcgcagttgcatcagttgcgt
ggccgcgtagggcggtcacaccatcaggcctatgcgtatctgctgacgccgccaccgaaa
gccatgtcggccgatgcacataaacgtctggaggccattgcctcgctggaagacctgggt
gccggttttgcgctggcgacgcacgaccttgaaatccgcggtgctggcgaactgctcggc
gaaggccagagcggccagatgaccagtatcggtttctcgctgtatatggagttgctggaa
aacgctgtcgaagcgttgaaagaaggccgcgagccatcgctggaggatttaaccaccagc
cagaccgaagttgaaatgcgcatgcctgcgctgctgccggaggatttcattcctgatgtg
aatacgcgcctgtcattgtataaacgtatcgccagtgcgaaaaccgaaggcgaactggat
gaactccgcgttgagctgatcgaccgttttggcacactgccggacggtgcgcgcaatctg
ttgctgattgccgtgctgcgcctgaaagccaaagaactcggtatccggcgtattgaaggc
aatgagcgcggcggattcattgagtttggcgataagaaccgtgtggatccgggcttcctg
attggtctgttacagaaacagccacaggtttaccgtctcgacggcccgacaaaactgaag
tttgtgttagacctgacagatcgcccgaaacgcctgaaatttgtcggcgacatgctgagt
gagtttactgagcatctgatctga
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