Rahnella aceris ZF458: JHW33_12095
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Entry
JHW33_12095 CDS
T07163
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
race
Rahnella aceris ZF458
Pathway
race00330
Arginine and proline metabolism
race00480
Glutathione metabolism
race01100
Metabolic pathways
race01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
race00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
JHW33_12095 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
JHW33_12095 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
JHW33_12095 (speF)
Enzymes [BR:
race01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
JHW33_12095 (speF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
CAGE1
Motif
Other DBs
NCBI-ProteinID:
QQN33222
LinkDB
All DBs
Position
complement(2630514..2632676)
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AA seq
720 aa
AA seq
DB search
MKHLKLAASASVAPYLQTARLVVDLRRADYADVAAIIISVGDLNHGRLADIETLGFGIPA
FVAVQGTEQVSPEFLPLLKGVITLSDANQAFYAAQIESAAQVYEEALFPPFFDTLKKYVE
MENATFACPGHQGGEFFRRHPAGRQFYDFYGPNIFRSDMCNADVKLGDLLIHEGSAKDAQ
KYAAKVFSADKTYFVLNGTSAANKVVTNALLTRDDLVLFDRNNHKSNHHGALLQAGATPV
YLETARNPFGFIGGIDAACFDETYLRAQIKEVAPHRATEKRPFRLAIIQLGTYDGTVYNA
RQVVDKIGHLCDYILFDSAWVGYEQFIPMMKECSPLLLELNENDPGIIVTQSVHKQQAGF
SQTSQIHKKDNHIKGQKRHCSHKKLNNAFMMHASTSPFYPLFAALDVNARIHAGGSGKHM
WMECVKLGIETRKMLLDQCSMILPFVPPTVGGKRWQDHETNEMANDVRFFDFVPGERWHA
FDGYAEKQYFVDPCKLLLTTPGIDASSGKYTEFGIPATILANYLRENGIVPEKCDLNSIL
FLLTPAETPAKMQLLVEELVRFEQYIEEDAPLSEVLPTVYRKNEDRYRNYTIRQLCQEMH
NLYVSFDVKELQKEMFRERSFPKVVMNAQDAHNEFIRDNIELVAIGDAEGRIAAEGALPY
PPGVLCVVPGELWGGAVQRYFMALEEGINLLPGFSPELQGVYIEKKTVGWKRVMGYVVSA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacttaaaacttgcagcaagcgcttccgtcgccccttatctccagacagcacgt
ctggtcgttgacctgcgtcgcgccgattacgcggacgttgcggccatcattatttctgtc
ggtgacctgaaccacggcaggctggcggatattgaaacgctgggatttggtattcccgcg
tttgttgcggtgcaggggacggagcaggtttcacctgagtttctgccgttgctgaaaggc
gtaatcacgctatcggacgccaatcaggcattttatgccgcgcagattgagtctgccgca
caggtttatgaagaagccttattcccgccgtttttcgatacgctgaaaaagtatgtcgag
atggagaacgccactttcgcctgtccggggcatcagggcggcgagtttttccgtcgccat
ccggcagggcgccagttttatgatttctatggcccgaatatttttcgctccgacatgtgc
aatgcggacgtcaaactgggcgatttactgatccacgaaggttcagcgaaagatgctcaa
aagtatgcggctaaagtcttcagcgcggataaaacgtatttcgtgctcaacggcacgtct
gcggccaataaagtcgtcaccaacgcgctgctgacccgcgacgatctggtgctgtttgac
cgtaacaaccacaaatcaaaccatcacggtgcgctgttgcaggcgggcgctacgccggtt
tatctcgaaacagcacgtaatccgttcggttttatcggcggcattgatgcggcttgtttc
gatgaaacttatctgcgagcacaaatcaaagaagtggcgccacatcgcgcgactgaaaaa
cgtccgttccgcctggcgattatccagcttggtacttatgacggtaccgtgtacaacgcg
cgtcaggtggtcgataaaatcggtcatctgtgtgattacatcctgtttgattccgcatgg
gtcggttacgagcaattcatcccgatgatgaaagaatgctcgccgctgctgctggagctt
aacgaaaatgaccctggcattatcgttacgcagtcggtacataagcagcaggccggattc
tcacagacctcgcagatccacaaaaaagacaatcacatcaaaggccagaagcgtcattgc
agccataaaaagctcaacaatgcgtttatgatgcatgcttcgaccagcccgttttatccg
ttgtttgccgcgcttgacgtcaatgcgcgcattcatgccggtggcagtggaaaacacatg
tggatggagtgcgtgaagctcggcatcgaaacccgcaaaatgctgcttgatcagtgctcg
atgattttaccgttcgttcccccaaccgtcggcggcaaacgctggcaggatcatgaaacc
aatgaaatggccaacgatgtgcgtttctttgattttgtgccgggtgaacgctggcacgcc
ttcgacggttatgccgaaaaacagtatttcgttgatccgtgcaagctgctgctgactacg
ccgggcattgatgcttccagcggtaaatacacggagttcggcataccggcgaccattctg
gcgaactatctgcgcgagaatggcatcgtgccggagaaatgtgacctgaactcgattttg
ttcctgcttaccccggcggaaacaccggccaaaatgcagttgctggtggaagagttggtg
cggtttgagcaatacatcgaagaagatgcgccgctcagcgaagtgctgccgacggtgtat
cgcaaaaacgaagaccgctaccggaattacaccatccgtcagctgtgccaggaaatgcat
aatctctacgtcagctttgatgtgaaagagttacagaaagagatgttccgtgagaggagt
ttcccgaaggtagtgatgaatgcgcaggatgcgcataacgagtttatccgcgataacatc
gagctggtggcaattggtgatgccgaaggccgtatcgctgcggaaggcgcgctgccatat
cctcctggcgtgctatgtgtcgtgccgggcgaactgtggggcggggcggttcagcgctat
tttatggcgctggaagaaggtatcaatctgctgccgggtttctccccagaattgcagggt
gtgtatattgagaaaaaaacggtcggctggaaacgcgtgatggggtatgtggtttctgcg
taa
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