Rahnella aceris ZF458: JHW33_12515
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Entry
JHW33_12515 CDS
T07163
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
race
Rahnella aceris ZF458
Brite
KEGG Orthology (KO) [BR:
race00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
race03019
]
JHW33_12515 (hrpB)
Enzymes [BR:
race01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JHW33_12515 (hrpB)
Messenger RNA biogenesis [BR:
race03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JHW33_12515 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQN33301
LinkDB
All DBs
Position
complement(2730959..2733403)
Genome browser
AA seq
814 aa
AA seq
DB search
MSSLPVSAVLEPLLAALQQAQQVLLLAPTGAGKSTWLPLQLLKQANLPGKILLLEPRRLA
AKNVAFRLAQQLNETPGQTVGYRMRAESKTSAATRLEVVTEGILTRMVQADPELTGVSMV
ILDEFHERSLQADLALALLLDVQNALRDDLKILIMSATLDNLRLSSLLPDAPVIESAGRS
FPVDRQYLSLATHERLDEGVARVVSRLMSENHGSMLLFLPGVAEITRVQNLLTGRLADDV
DLCPLYGALSLEQQQKAIQPSPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERSAQFDP
RSGLTRLVTQRISQASMTQRAGRAGRLEPGLCWHLFSKEQAERASAQAEAEILQSDLSSF
WLELLQWGCQDPAQLQWLDAPPPASLSAAKNLLQQLGATDAQGKLTAAGQRMARLGCEPR
LAAMLISATAQSPDALATSALLAAMLEEPPRGGLPDMDYWFSRPQGNWQRRAKQLAQRTG
AKNGEPDASLAPWLLARAFSDRIAQRRGEDGRYLLANGLGASLPQDDGLTRAPWLVAPQL
LQGNNSPDARILLAITLDISQLPSRLPDVVKEQTAVEWDEEKGTLRAWRRWRIGRLVLKA
NPLAKPDDGELQQALIDWIRTQGLQALNWSVAAEQLRVRLLCAAKWLPEADWPSVDDQAL
LDGLERWLQPSLQGVRSLKSLQQVDLHDALLRLLDWQQRQRLDSALPTHYTVPTGSRLPI
RYHADQPPALSVRMQEMFGEQRSPQLAEGRVAVVLELLSPAQRPLQITADLAAFWQGSYR
EVQKEMKGRYPKHPWPDNPAQALPTRRTKKSSAP
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctttgccggtcagcgccgtactcgaaccgcttttagctgcactgcaacaggct
cagcaggtgctgttgcttgcgccaaccggtgcaggtaaatccacctggctgccgttgcag
ttgctgaaacaggccaacctgccgggtaagatcctgctgcttgaaccgcgccgtctggcg
gcgaaaaacgtcgctttccgtctggcgcagcaactgaatgaaacgccggggcagacagtg
gggtatcgcatgcgtgcagaaagcaaaaccagtgcggcgacccgtcttgaagtggtgacc
gaaggcattctgacccgcatggtacaggctgatcccgaactgaccggcgtgtcgatggtg
atccttgatgaattccatgagcgcagtttgcaggccgatctggcgctggcattgttgctc
gatgtgcagaatgcgctgcgcgatgatttaaaaattctgattatgtcggccacgctcgac
aacctgcgcctgtcttctttactgccggatgcgccggtgattgaatccgcaggccgcagt
tttccggtcgacaggcagtatctttctctcgcgacacacgaacggctggatgaaggcgtg
gcgcgggtagtcagccgtctgatgagtgaaaatcacggctcgatgctgctgtttttaccc
ggtgtggcggaaatcacccgtgtacagaatttgctgaccggcagactggcggacgacgtc
gatctctgcccgctgtacggtgcgctgtcgctggaacaacagcaaaaagccattcagccc
tcaccggccggacgccgcaaagtggtgctggcgacgaatattgctgaaaccagtctgacc
atcgaaggtatccgtctggtggtcgacagtggtctggagcgcagcgcgcagtttgacccg
cgcagcggcctgacgcggctggtaacacaacgcatcagccaggcgtcgatgacccaacgt
gcgggccgtgccggtcgtctggagccgggcttgtgctggcatcttttcagcaaagagcag
gcggaacgcgccagtgctcaggcggaagccgaaattctgcaaagcgacctgagcagtttc
tggctggagttgttgcagtggggctgtcaggatccggcgcaacttcagtggctggatgcg
ccgcctcccgcttcgctgtccgccgcaaaaaatcttttacagcagcttggcgcaaccgat
gcgcagggcaaactcaccgctgccggacaacgcatggcccggcttggttgtgagccgcgg
ctggcggcgatgctgatttctgccacagcacaaagtcccgatgcgctggcaacgtcggcg
ctgctggcggcaatgcttgaagaaccgccacgcggcggattaccggatatggattactgg
ttcagccgtccgcagggaaactggcagcggcgggcaaaacaactggcgcagcgtaccggc
gcgaaaaacggtgagccggatgcttcgctcgcgccgtggttactggcgcgggcgttcagc
gaccgtattgcccagcgtcgcggcgaagatggccgttatctgctggcgaacggactgggg
gcatccttgccgcaggatgacggattaacccgcgcaccgtggctggtcgcgccgcagtta
ttacagggcaacaacagcccggatgcccgtattttgctggcgatcacgctggatatttcg
caacttccgtcgcgcctgccggatgtcgtcaaagaacagacggcggtagaatgggatgaa
gaaaaaggcacgctgcgcgcctggcgccgctggcggatcgggcgtctggtgctgaaagcc
aatccgctggcaaagccggacgacggagagctgcaacaggcgctgatcgactggatccgc
acgcagggtttgcaggcgctgaactggtcggtcgccgcggagcaattgcgcgtgcggctt
ctttgtgccgcaaaatggttgccggaagccgactggccttcggttgacgatcaggctttg
ctcgacggtctggaacgctggttacagccttctttacagggtgttcgttcgctgaaatcg
ttgcagcaggttgatttacatgatgccttgctaaggctgcttgactggcaacagcgtcag
cgtctggacagcgcattgccgactcattacaccgtgccgactggcagtcgtctgccaatc
cgttatcatgcagaccagccaccggcgctctcggtgagaatgcaggagatgttcggcgag
cagcgtagcccgcaactggcggaagggcgtgttgctgtggtgctggaactgctgtcaccg
gcacagaggccgttgcagatcaccgccgatctggcggcattctggcagggttcttatcgc
gaagtgcagaaagaaatgaaagggcgctatccgaaacatccgtggccggacaatccggcg
caggcattgccgacgcgccgtaccaagaagtcttcagcgccatga
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