Rhizobium acidisoli: CO657_06550
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Entry
CO657_06550 CDS
T06438
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rad
Rhizobium acidisoli
Pathway
rad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO657_06550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rad03019
]
CO657_06550
03009 Ribosome biogenesis [BR:
rad03009
]
CO657_06550
Enzymes [BR:
rad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CO657_06550
Messenger RNA biogenesis [BR:
rad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CO657_06550
Ribosome biogenesis [BR:
rad03009
]
Prokaryotic type
rRNA processing factors
CO657_06550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QAS77759
UniProt:
A0AAE5TUT9
LinkDB
All DBs
Position
complement(1311087..1313984)
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AA seq
965 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP
DVGIVPAEAPETADVTEEPAAAEAVASPEAAEEAPAKKARPRRSRKKAAEPVAETTATED
AVPTDVEAEGASSVDNEDDGSTGGTMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEV
IESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLA
GRYSVLMPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKR
DFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKD
FMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSID
VNSGRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKL
KECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHV
LRGIEEYLLKNTTHNISVRTTPDIALYLLNHKRQTIIDYENRFGVAIVIDADGSVGAQHF
AIDRGEAVENPVKIETLFNFAAIPEDDDDDIVIEMDEDEDEELEEKPAATERPVAARSEG
EGDGNRKRKRRRRRRGRNGNAEQPASAAGEAGDEDEDSDDEGGEGDETTEGATETLAESE
ESQRRKRRRRGKRGGRRNRAEDGSELTAGEAGEDNGGDEGGEEGEADDVSNGGAAGEAET
VEAVAEQAGESQAAAAAVEGAAVVAEDVKPARGRGRRKAAAAPVEELVAEAAPVPKAEPE
LVEASADLETPAQEEAPEEAKPVRANRESNITSSEPTVKSTRSENGESDDGKPKKAGWWQ
RRGFF
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaatttgacttcgagtcccagcacaagaagcagatccgcggc
aacatctatctggcaaaggtaacgagggtcgagccctcgctgcaggccgccttcgtcgat
tacggcggcaaccggcacggcttcctggccttcgccgaaatccatcccgactattatcag
ataccgcttgccgaccgtcaggcactgcttcgggccgaagccgaggagcatcgccgcgac
gaagacgtcgagcacgtcgaaaccgcgccgatggtcgatctttccaagcaggatcagccg
gatgtcggcatcgtgccggccgaggcgccggaaacggcagatgtaacggaagagccggca
gcggcggaggccgttgcatcgcccgaggccgccgaggaagcgccggccaagaaggccaga
ccgcgccgcagccgcaagaaagccgccgagccggttgccgagacgaccgcgaccgaggac
gccgttccgacagacgtcgaagccgaaggcgcttcgagcgtcgacaacgaggatgacggc
tcgaccggcggcacgatggccgccatggtcgaaaccgactcgatctccgaagacgtcgac
accagcaagcgtcgccacgatgacgacgacgacgatgacgatcacggcgaagaggaagtc
atcgaatccgtcggcgccgaagacgcgatggaagaggtaccggaccgcgtgcagcgcaag
ccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctggtgcag
gtcgccaaggaagagcgcggcaacaagggtgcagcgctgaccacctatctgtcgcttgcc
ggccgctattccgtgctgatgccgaacacggcgcgcggcggcggcatttcccgcaagatc
accaaccctgccgaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaagtgccgcag
ggcatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaaggtcgaggtcaagcgc
gacttcgaatatctgatgcgcctctgggagaacgtgcgcacgctgacgctggcgtccacc
gctccctgcctcgtttatgaggaaggctcgctgatcaagcgctcgatccgcgacctctac
aacaaggatatcggcgagatcatcgttgcaggcgaggaaggctatcgtgaagcgaaagac
ttcatgaagatgctgatgccgagccatgccaaggtggttcagccctatcgcgacatccac
ccgatcttttcgcgctccggcatcgaagcccagctcgaccgcatgctgcagccgcaggtg
acgctgcgttccggcggctacctgatcatgaaccagacggaagcgctggtttcgatcgac
gtcaactccggccgctcgacgcgcgaacactcgatcgaggacaccgcgctgcagaccaac
ctggaagccgctgaggaaatcgcccgccagcttcgcctgcgcgaccttgccggtctgatc
gtcatcgacttcatcgacatggaagagaagcgcaacaaccgcgccgtcgagaagaagctg
aaggaatgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgcatttcggc
ctgctggaaatgtcgcgccagcgcatccgcgcctcggttctcgaatcgaccacgcaggtc
tgctcgcattgcggcggcagcggccatgtgcgttcgcagtcctcggtcgcgctgcatgtc
ctgcgcggcatcgaggaatatctgctcaagaacaccacgcacaacatcagcgttcgcacc
acgcctgacattgcgctctacctgctcaaccacaagcgccagacgatcatcgattacgaa
aaccgtttcggcgtcgctatcgtcatcgatgcggacggttcggtcggtgcgcagcatttc
gccatcgatcgcggcgaggccgtggagaacccggtcaagatcgagacgctcttcaacttc
gcagccattcctgaggatgacgacgacgatatcgtcatcgaaatggatgaggacgaagac
gaggaactcgaggaaaagccggcagccaccgagcgacccgtcgcggcacgctcggaaggc
gaaggtgacggcaacaggaagcgcaagcgccgtcggcgccggcgcggccgcaacggcaat
gccgagcagccggcatcggcagcaggcgaagccggcgacgaggatgaagacagcgacgac
gagggtggcgaaggtgatgaaaccaccgaaggcgcgaccgagacgctggctgaaagcgag
gaatcgcagcgccgcaagcgccgccgtcgcggcaagcgtggcggccgccgcaaccgcgcc
gaagatggttccgaactgacggccggcgaagccggtgaagacaatggcggtgacgaaggc
ggcgaagaaggcgaagccgacgacgtttcgaacggcggcgctgctggagaagccgaaacg
gtcgaagcggttgccgagcaggctggcgaaagtcaggccgcagccgccgctgtcgagggt
gcggctgttgtcgccgaggatgtgaagcccgcccggggccgcggccgccgcaaagccgcc
gcagcgcctgtggaggagctcgtggcagaagcagctcctgtccccaaagccgagccggag
ttggtcgaggcctccgccgatctcgaaacgcccgcccaggaagaggccccggaagaggca
aagccggttcgcgccaaccgcgaatccaacatcacctcctccgagccgacggtgaaatcc
acccgcagcgaaaatggcgaaagcgacgacggcaagccgaagaaggccggttggtggcag
cgccgtggcttcttctga
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