Rhizobium acidisoli: CO657_14850
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Entry
CO657_14850 CDS
T06438
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rad
Rhizobium acidisoli
Pathway
rad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO657_14850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rad03019
]
CO657_14850
Enzymes [BR:
rad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CO657_14850
Messenger RNA biogenesis [BR:
rad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO657_14850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
HEM4
AAA_19
Flavi_DEAD
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QAS80758
UniProt:
A0AAE5TZG1
LinkDB
All DBs
Position
3003868..3005640
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AA seq
590 aa
AA seq
DB search
MVRSGDSRCGAPKGFALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHL
RINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDL
GFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDIAVASGEAPANISSAGPRRGNGNGNNRNRGGGQGRE
GQGRGEGRGDQNRSEHRGSRQERRPRREGEGSENRASGSEVRAGGEERRERRPRPERTSR
NEDFRGQRRGEATPNLGPDNDLVSTSDFRPSAKPQRPAHGGPNSHHANGEPSGHHRGNNR
HAHGRPARKHGEDRGPQQAQGGEPRREGNGGNRRGGSGSRNGGGQRRERA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcgttgtggcgccccgaaaggttttgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacaggccatccctctcctcctcgaaggccgcgacctgatcggc
cttgcccagaccggcaccggcaagaccgccgccttcggcctgccgctcatcgaaaaattg
cttgccgacgagcgccgccccgacaaccgcacgacgcggacgctgatcctggcgccgacc
cgcgaactggtgaaccagatcgccgagagcctgaagaaattcatccgcaagtcgcatctg
cgcatcaacgtcgtcgtcggcggtgtttcgatcaacaagcagcagcttcagctcgaaaag
ggcaccgatgtcctggtcgcaacgcccggccgcctgcttgacctcatcaatcgccgcgcc
atctcgctgaccacggtccgctatctcgtgcttgatgaagccgaccagatgctcgacctc
ggcttcgtccacgatctgcgcaagattgccaagatggtgccgaagaagcgccagaccatg
cttttctcggccaccatgccgaaggcaatcgccgatctcgccggcgactacctcgtcgat
ccggtcaaggtcgaagtcacacctcccggcaaggctgccgacaaggtcgagcaatatgtc
catttcgtcgccggcaagaacgacaagacggaactgctgcgcaagtcgctgaccgaaaac
cccgatggccgcgccatcgtcttcctgcgcaccaagcatggtgcggagaagctgatgaag
catctcgaaaacatcggctattccgtcgcctcgatccatggcaacaagagccagggccag
cgcgagcgggcgctgaaggcgttccgcgatggcagcatcaagacgctgatcgccacggac
gttgccgcccgcggcatcgacatcccggccgtcagccatgtctataattacgacctgccc
gaagtgcccgacgcctatgtccatcgcatcggtcgcacggcgcgcgccggccgcgacggc
atcgcgatcgccttctgcgcccccgacgaagccaagctgctgcgtgatatcgagcgcctg
atgggcatcgacatcgcagtcgcaagcggcgaagcaccggccaatatcagcagcgccggc
ccgcgccgcggcaacggcaatggcaacaaccgcaatcgcggtggcggccagggtcgcgaa
ggccagggtcgcggcgaaggccgtggcgaccagaaccgctcggagcatcgcggcagccgc
caggaacgccggccgcgccgtgaaggcgaaggcagcgaaaatcgcgccagcggcagcgaa
gtgcgtgccggtggcgaggagcgccgggagcgccgtccgcgtcccgaacgcacgagccgc
aacgaggatttccgcggccagcgccgcggcgaagccacccccaatctcggccccgacaac
gatctggtctcgacctcggatttccgtccctcggcaaagccgcagcgtcctgcccatggc
ggccccaatagccatcatgccaatggcgagccgagcggtcatcaccgcggcaataaccgc
cacgcccacggccgcccggcccgcaagcacggcgaagaccgcggcccgcagcaggcccag
ggcggcgaaccgcgccgcgagggcaatggcggcaaccgccgcggcggctccggctcccgc
aatggcggcggccagcgccgcgaacgcgcctga
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