Riemerella anatipestifer RA-CH-2: G148_0031
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Entry
G148_0031 CDS
T02438
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rae
Riemerella anatipestifer RA-CH-2
Pathway
rae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G148_0031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rae03021
]
G148_0031
03400 DNA repair and recombination proteins [BR:
rae03400
]
G148_0031
Enzymes [BR:
rae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G148_0031
Transcription machinery [BR:
rae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G148_0031
DNA repair and recombination proteins [BR:
rae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G148_0031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AGC39336
LinkDB
All DBs
Position
complement(34148..38416)
Genome browser
AA seq
1422 aa
AA seq
DB search
MSNKNKTSRFNKISIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQQGIAKKLDGSDFEEMEFLTEEEYLDILDTLPAENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSYDLRHKAHNETSKQRRTEALKRLSVVEALRDA
NTRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPTLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTEDYKVK
GEGLTFYSPEEAEIAYNEGQVTLNAKVKCKLPVKNENGELVTKLIETTVGRILFNQIVPE
QIGFINELLTKKSLRNVIGRILAETDFPTTVQFLDRMKDLGYSNAFKGGLSFSLADIVVP
EEKKQMIASAVESVDDIKANYNMGLITDTERYNQVIDVWTNTNANLTEMIMQRMKTDQGG
FNSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGVEVTPLKKNDEIV
EKLSERILGRISLHDIYDPETDELIVEADVLIDEELAKKIEEAGIESVEVRSPLTCESKR
GICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVA
KRDGIVEMDEIRTVTSEDEEGNQAEIVVSRSTEFRLVADNASRTPIMVANLPYGSILSVK
PGDKVKKGDLIARWDPYNAVIIAETSGKVEYEDIIKGVSFQLEIDEQTGFEEKVISESRN
KKAVPTLRVVDSKGVEQKSYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLP
RVTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVESKSGEIKKYLVKLSNQILVQE
NDFVRAGSPLSDGSVTPNDILAIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQM
MTKVEIVDGGDTQFLEGSLEHKQDFIEENERVFGMKVVTDPGDSQELKAGQMITARELRD
ENSKLKREDLKLVEVREALTATAHPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSG
KVDELNGLKENVIVGHRIPAGTGLKDYQNFIVGSNKEFEDLN
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtagatttaataaaatctcgataggtttagcttcacca
gagtctattttacaagattcaagaggggaagtattaaaaccagaaaccattaactataga
acgcacaaacctgaaagagacgggcttttctgtgagaaaatattcggtcctgtaaaggat
tacgagtgtgcttgtggaaaatataagcgtatccgttataaaggcattgtctgcgaccga
tgcggtgtagaagtaacggagaaaaaagtgcgtagagagcgtataggacacatcaatttg
gtagttcctgtagctcatatttggtacttccgttcgttaccaaacaagataggttatctt
ttaggattaccatctaagaagttagatatgattatctactacgaaagatatgtggtaatt
cagcaaggtatcgctaaaaaattagatggttctgatttcgaggaaatggaattcttaacc
gaggaagaatatctagatattttagatacacttcctgcggaaaatcaatacttagatgac
tctgaccctaataagtttatcgctaaaatgggagcagaggctgtggaagaattattaaag
agaatagatttagatgctctttcttatgatttaagacacaaagctcacaacgaaacatct
aagcaaagaagaacagaagcacttaaaaggttatcagtagtagaagcacttagagatgct
aacacgagaatgattaatcgtccagagtggatggtgatgcgtgtgcttcctgtaatacca
ccagagttaagaccattagtgccactagatggtggacgttttgcgacatcagaccttaac
gacctttacagaagagtaattatcagaaacaaccgtcttaagagacttctagaaattaaa
gctcctgaggttatcttaagaaacgagaagcgtatgcttcaagaagcggtagattcttta
tttgataatacaagaaaatcttctgcggttaaatctgagtctaacagaccattaaaatct
ctttctgattcattaaaaggtaagcaagggcgtttccgtcaaaacttacttggtaaaagg
gttgactactctgctcgttcggtaattgtggtaggtcctaccttacaactacacgagtgt
ggtatccctaaagatatggcggcagagctttataagccgttcatcatcagaaaactaatc
gagagaggtatcgtaaaaacggtaaaatctgcgaagagaattatagatagaaaagaacct
gtggtgtatgacattctagaaaatgtaatgaaaggtcacccagtacttcttaaccgtgca
cctacgcttcaccgtttaggtattcaggcattccaacctaaaatgattgaaggtaaagcg
atacaactacatccattggtaactacggcattcaacgccgactttgatggtgaccagatg
gcggtgcacttacctttaggtccagaagctattttagaggctcaacttttaatgttaggt
tctcagaatatcttgaaccctgctaacggttctccaattacggtaccatcacaggacatg
gtacttgggctttactttatgactaaagaagctcactctacggaggattataaagtgaag
ggagaaggtttaactttctattctccagaggaagcagaaattgcctataatgaaggacaa
gtaacgcttaatgctaaagttaagtgtaaacttcctgtaaaaaatgaaaacggagaatta
gtaactaaactgattgaaactactgttggtagaattttattcaatcagatagtacctgaa
caaataggattcatcaatgaacttttaacgaagaaatcattaagaaatgtaattggtaga
atcttagcagaaactgatttcccaactacagttcagttcttggatagaatgaaagattta
ggatactctaacgcattcaaaggaggtctatcgttcagcttagctgatattgtggtgcca
gaagagaagaaacaaatgatagcttcggcggtagaaagtgtagatgatattaaggctaac
tataacatgggtcttatcactgatactgagcgttataaccaagtgattgatgtttggaca
aatactaacgctaaccttaccgaaatgattatgcagagaatgaagaccgaccaaggtggt
tttaactctgtatatatgatgctagattctggtgcgaggggttctaaagagcagattcgt
cagttatcaggtatgcgtggtctaatggcaaaacctcaaaaagcaggttcagtaggtgca
gagattatcgaaaaccctattgtagctaactttaaagaggggctttctatccttgagtac
tttatctctactcacggtgctcgtaaaggtcttgcggatacggcgcttaaaacggcggat
gctggttacttaacgagaaggttggtagatgtagctcaagacgttatcattactgaagac
gattgtggtactctaagaggtgtggaagtaacgccacttaaaaagaatgatgaaatagta
gagaaattatctgaaagaattttaggtagaatttctttacatgatatatatgacccagaa
acagacgagttaatcgtagaagctgatgttcttatagatgaagaattagctaagaagata
gaagaggctggtatagagtctgtggaggttcgttcacctttaacttgtgaatctaagaga
ggtatctgtgctaaatgttacggtagaaacttagctacaggtaagatgattcatatggga
gaagctgtgggtgttattgcagcacagtccatcggggaacctggtacacagcttaccttg
agaaccttccaccaagggggaacagcgggtaacgtttccgaaaatccatctatcgtagct
aagagagatggtatcgtagaaatggacgaaattagaacggtaacttctgaagatgaagaa
ggaaaccaagctgaaatcgtggtgtctcgttctaccgaattccgtttggtagcagataat
gctagcagaacacctataatggtagcaaacttaccttacggttcaatactttctgtaaaa
ccaggggataaagtgaagaaaggagaccttatagcaagatgggatccgtataatgcggta
atcattgctgaaacttctggtaaggtagagtacgaagatattatcaaaggcgtgtctttc
caattagaaattgacgaacagacaggctttgaagaaaaggtaatctctgaatctagaaac
aaaaaagcggtacctacccttagagtggtagattctaaaggagtagagcaaaaatcttac
aacttacctgtgggagctcacttaatggtaaatgatggagagaagattaaagctggtaag
attttaattaaaatcccaagaaaatctgcaaaagcaggggatatcacgggaggtcttcct
agagtaacggaacttttcgaagctagaaatccttctaatcctgcggtagtaacagaaatt
gacggggtagtatcttacggaaaaatcaagagaggtaaccgtgagcttatcgtagagtct
aaatcaggagaaattaagaaatacttggtgaagttatctaaccaaatcttagttcaagaa
aacgacttcgtaagagcaggttctccattgtcagatggttcagtaacgcctaatgatatt
ttagcaattaaaggtcctacagcggtacaagaatatttggtaaacgaaatccaagaggta
taccgtctacaaggggtgaagattgatgacaagcactttgaaatcatcgttcgccaaatg
atgacgaaagtagagattgtagatggtggagatactcagttcttagaaggtagtctagaa
cataagcaagactttatcgaagagaacgaaagagtgtttggtatgaaggtagttaccgat
ccaggagactctcaagagcttaaagcaggtcagatgattacagcgagagaattaagagac
gaaaactctaagcttaagagagaagacttaaaactggtagaagttcgtgaagcacttacg
gctacagcacaccctgttttacaaggtatcacaagagcggctctacaaactaagtcattt
atgtctgcggcatctttccaagaaactactaaggtacttaacgaagcagcggtatcaggt
aaagtagatgagttgaatggtcttaaagaaaatgtaattgtaggacatagaattcctgca
ggaacggggcttaaagattatcagaactttatcgtaggttctaataaagagtttgaagat
ttaaattaa
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