Riemerella anatipestifer RA-CH-2: G148_0752
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Entry
G148_0752 CDS
T02438
Name
(GenBank) Single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rae
Riemerella anatipestifer RA-CH-2
Pathway
rae03410
Base excision repair
rae03430
Mismatch repair
rae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
G148_0752
03430 Mismatch repair
G148_0752
03440 Homologous recombination
G148_0752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rae03400
]
G148_0752
DNA repair and recombination proteins [BR:
rae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
G148_0752
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
G148_0752
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G148_0752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
ArnB_C
Motif
Other DBs
NCBI-ProteinID:
AGC40056
LinkDB
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Position
complement(770589..772298)
Genome browser
AA seq
569 aa
AA seq
DB search
MNQKWIYKPEPSEEVVDALISSIGYGTLESKILVLREIDNYQKAREFFKPNLEDIHNPFL
MADMQNAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKKYLDFYIPDRNT
EGYGISKEGIDFAKENGFSLIIALDCGIKAIDKIDYAKELGIDFIICDHHLPGENIPKAV
AVLDPKRTDCRYPFKELSGCGVGFKLCQGLNNIYRIPDEELYELTDLLAISIAADIVSMT
GENRVLAKLGLKTLRKTRNLGIRLLIPKEKLATFDISNIVFEIAPKINAAGRISHGKAAV
ELMVSDNLKHATQIVENILNLNDHRREMDMSSTTAALQQVIDTQQIQNATTVVYGSDWNK
GVIGIVASRLTETYYKPTVVFTDGNNGEIVASARSVSDFDVHAALEECSDLFLKFGGHPA
AAGLSMEKEKFELFKEKFEKTVAKNIKEHQKEPSITIDTVVDIDDLNKDFYNFHRKLAPF
GPHNMKPILVLKNLNISGHVKQMGKDNSHIKFYIQNPNNKRNIECVGFKLGHFADEFRNK
TFDLAFTVEENHWKGNVTYYLNIKGVKFS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaaatggatttacaaaccagaacctagcgaggaagtagtagatgcccttatt
tcatctataggctatggcacactagagtctaaaatactcgtcctccgcgagatagataat
tatcagaaagcaagagaattctttaaacccaaccttgaagatatacacaacccattctta
atggcagatatgcaaaacgccgtagaacgcattgctaccgctatagagaacggagaaaaa
atattagtctatggagattatgatgtagatggcaccactgccgtagcactaatgtaccta
taccttagtaaaattgtagagaagaaatatctagatttttacattcctgaccgaaataca
gaaggctatggtatttccaaagaagggatagatttcgctaaagaaaacggcttttcgcta
attattgctttagattgtggcataaaagctattgataagatagattacgctaaagagtta
gggatagactttattatatgcgaccaccacttaccaggggaaaacattcctaaagcagta
gccgtactagaccccaaaagaaccgattgccgttatcctttcaaggaactttcaggctgc
ggtgtagggtttaaactatgccaaggactcaataatatttatagaatacccgatgaggag
ctgtacgaacttacagatttgttagccatttctatcgcggcggatatcgtctctatgacg
ggcgaaaaccgtgtactcgcaaagttaggacttaaaaccttgagaaaaactagaaatcta
ggtataaggcttttaatcccaaaagaaaaactagcgacttttgatatttctaatatcgtg
tttgaaatcgcaccaaaaataaatgccgcaggaagaatttcacacggtaaagctgctgtg
gaactcatggtttcagataacttaaagcacgccacacagattgtagaaaacatactaaac
ctcaacgaccacaggagagaaatggatatgagttctaccaccgctgcactccagcaggta
atagacacccaacaaattcaaaacgccaccaccgtagtttatggctccgattggaacaaa
ggcgttataggaattgtagcctcgaggcttaccgaaacttattataaacctaccgttgta
tttaccgatggtaataatggagagattgtagcttcggcaaggtcggtatcagattttgat
gttcatgccgctttggaagagtgttcggatttatttctaaaattcggaggacaccctgct
gctgctgggctttctatggaaaaagaaaaatttgaactctttaaagaaaagtttgaaaaa
acagttgcaaagaatatcaaagaacatcaaaaagaacctagtatcactattgataccgta
gtagatatagacgacttaaataaggatttctataattttcatagaaaactagctccgttt
ggccctcataatatgaaacctattttagtccttaaaaatcttaatatcagcgggcatgta
aagcaaatgggtaaggataacagccacattaagttttacattcaaaacccaaacaacaag
cggaatatagaatgcgtaggatttaaactaggtcatttcgcagacgagttccgcaataaa
acctttgatttagcctttaccgtagaagaaaaccactggaaaggtaatgtaacttattac
ctcaacatcaaaggcgttaaattctcttaa
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