Riemerella anatipestifer RA-CH-2: G148_1933
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Entry
G148_1933 CDS
T02438
Name
(GenBank) Transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rae
Riemerella anatipestifer RA-CH-2
Pathway
rae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G148_1933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rae03400
]
G148_1933
Enzymes [BR:
rae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G148_1933
DNA repair and recombination proteins [BR:
rae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G148_1933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AGC41237
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All DBs
Position
2028642..2032001
Genome browser
AA seq
1119 aa
AA seq
DB search
MILSPIHESLLPFLLKHQFGNSVLEALPHHQHISVKGMAGSSPSLICAELFLTQNQPILL
IVDDKEDAHYTTTELEELLGEDKVLYFPATHLEPYQTEKTQNANLVLRTEVLNQLNANPE
PKVIVAHYAALCEKVLKKEDFKAISHHIKVGYQLDFDFTGELLEQFNFHLTDFVSEPGEF
AVRGGIVDVFSYANDKPYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAVQGT
KVPFLDLLPKDSFIVTKNAYLGLNYIRDFYTKAEEKYTQLNSDIKHQKPNELFISDEVFF
KTYQKFRTVDFTSQSLQLPQAPFIELKQNPQPSFNKNFELLIEDLEEKQKQGFNLWISFS
SEKQKERLKSIFEDLGSAISFQFFKSELHQGFIDHQHKILVYTDHQIFDRYQRYRAKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNGGKTQECFKLTYKNGDLLYVSI
HALHKISKYNGAEGKEITLSKIGSPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAY
TPDTYLQNELEASFLYEDTPDQEKATLDVKRDMEADTIMDRLVCGDVGFGKTEVAIRAAF
KAATDGKQVAVLVPTTILAFQHYRSFAERLKDFPVNISYLNRFRTAKQKRETLEKLAEGK
IDIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLK
DIAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRK
KLFKSSKDVNIDTDLELMLPDSYVSSTEERLNLYQKLAEINNKEELKRFEAELEDRFGSL
PEEAINLLKSVELKWLAAAIGFEKIVMKNSIFLGYFPSNPQDKFYQTEKFKKIIQYLSQN
PQKASLKEKHSAESNQLMMRKDHINDVDEVNELLQAILN
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgattttatccccaatccacgaaagccttttacctttcctcctaaaacatcaattcgga
aactccgttttggaagctttacctcatcatcagcatatttctgtaaagggaatggcgggt
tctagcccaagtttaatctgtgccgagctattcctcacccaaaaccaacctatcctcctt
atagtagatgataaggaagatgcccactacaccactacagaactggaagaactactcggc
gaagataaggtactctatttccctgccacccacctagagccttaccaaaccgaaaaaaca
caaaatgccaatttggtattaagaaccgaagtgcttaatcagctcaacgccaatccagag
ccaaaagttattgtagcccactacgctgccctttgtgaaaaggtgcttaaaaaggaagat
tttaaagccatttctcaccatattaaggtgggctaccagctagattttgattttacaggc
gaactattggagcagtttaattttcacttaaccgattttgtttccgaaccaggagagttt
gccgtaagaggcggtattgtagatgtattctcctatgccaatgataagccttatcgtatc
actttttttggcaacgaggtagaaagcatcaaaacttttgatattgaaactcaactatcc
ataagtaaggtagaaagtctgcaattggtttctaatatgaattttgcagtgcaaggcacc
aaagttccgttcctagacttactgccaaaagatagctttattgttactaaaaatgcctat
ctaggacttaactacatcagagatttttacacaaaagcagaggaaaaatatacccaactc
aactccgacatcaaacatcaaaaacccaacgaactatttatatcagacgaggtatttttt
aaaacctatcaaaagtttagaacggtagattttacctcgcaatcgttacaacttcctcaa
gctccttttattgaactcaaacaaaacccacaaccgagttttaacaagaattttgaactc
ctcatagaagacctagaagaaaaacaaaagcaaggctttaatttatggatttcgttttcc
tccgaaaaacagaaagaacgactgaaaagtatttttgaagatttgggaagcgccatttct
tttcagtttttcaaatcggagctgcatcaagggtttatagaccaccagcacaaaatcctt
gtctatactgaccatcaaatttttgatagataccaacgctaccgagctaaaaacactttt
gccaagtctgaacaactcacacttaaagatttaatgtctttaaaagtaggcgactacatt
gcccatattgaccacggcatcgggaagtttatggggctggtaaaggtaaataatggtggt
aaaactcaagaatgttttaaattgacttacaagaacggagatttgctctatgtaagcata
cacgccctgcataaaatttctaaatataatggtgccgaaggtaaagaaattacactttcc
aaaataggctctccttcgtggaagaacctcaaaaataaaactaaagccaaggttaaacaa
attgcatttgaccttataaaactttacgctaaaaggaaaaccgccaaaggcttcgcctat
acaccagacacttacctccaaaatgaattagaggctagctttctctacgaagatactcca
gaccaagaaaaggcaacgctagatgttaaacgagatatggaagccgataccattatggat
agactcgtctgtggtgatgtgggatttggtaaaaccgaagtggctataagagccgccttt
aaagccgctacagatggtaaacaagttgctgttcttgtacctactaccattttagcgttt
cagcattaccgaagttttgcagaaaggcttaaagatttccctgttaatatttcatacctc
aatcgttttcgtacagcaaaacaaaaacgagaaaccctagagaaactcgccgaaggtaaa
attgacatcatcatcggtacccatcaacttgcctccgacaaagtcaagtttaaagattta
gggcttctcattatagacgaagaacataagtttggagtttctgtaaaagacaaacttaaa
actttaaaagccaatatagatactctcacgcttaccgctacgcctatccctagaacgcta
caattttcgctaatggcagcgagagatttatccgtaattaaaacacctccacccaacagg
caacctgtggaaactcaactcataggttttgatgaagaaattataagagatgccatttcc
tacgaattacaaagagatgggcaggtctatttcatcaataacagaattgataacttaaaa
gacattgcgggaatgatacaacgcctcgtccccgatgctagagtgattacaggacacgga
caaatggacggtaagcagctagaagaaaacatattagactttatggaaggaaggtatgat
gtactggtttctaccacgattgtagaaagcggcgtagatgtacccaacgccaatactatc
tttattaacgatgcccaaaggtttggtatggcagatgtccaccaaatgcgtgggcgagta
ggaagaagcaaccgaaaagccttttgttaccttattacaccaccttttgatatggtaact
tctgatgcaagaaaacgacttgaagccatagagcagttttccgatttaggcagtggtttc
caaatcgcaatgaaagaccttgaaatccgtggtgcgggtgatttacttggtgcggaacaa
agtggatttatcaacgagatgggctttgaaacttatcaaaagataatgcaagaatcctta
gaagaattgcaaaatgatgccgagtttgaaagcctttttgaaaacgaagcagaccgcaaa
aaactattcaaatcctctaaagatgttaatattgacaccgatttggaactaatgctaccc
gactcctatgtaagtagtacagaggagcgactaaacctctaccaaaaacttgcagaaata
aataacaaagaggaactaaaacgctttgaggcagaactagaagaccgttttgggtcattg
ccagaagaagccatcaacctactaaaatcagtggaattaaagtggctagctgcagctatt
ggtttcgaaaaaattgtaatgaaaaatagtattttcttgggctattttcctagcaatccg
caagataaattttaccaaaccgagaaatttaaaaaaattatccagtacctcagccaaaat
cctcaaaaggcaagtcttaaagaaaaacattcggctgagagcaaccagcttatgatgaga
aaagaccatattaacgatgtagatgaagtgaatgaacttctgcaagctatactcaactaa
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