Rickettsia africae: RAF_ORF0572
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Entry
RAF_ORF0572 CDS
T00979
Name
(GenBank) Putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
raf
Rickettsia africae
Pathway
raf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAF_ORF0572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raf03019
]
RAF_ORF0572
Messenger RNA biogenesis [BR:
raf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RAF_ORF0572
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
DUF4587
Anti-Pycsar_Apyc1
DUF826
Motif
Other DBs
NCBI-ProteinID:
ACP53481
UniProt:
C3PNH1
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Position
597764..599446
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AA seq
560 aa
AA seq
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MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYQGQWLMIDCGSGFADDYLPGVDMIIAD
SSFIEKYKKDIVGLILTHAHEDHLGGVQYLWHRLKCPIYITTFTANFLKIRLNEYDFAKN
IKIHEVKPGSKINLDPFSLEMVPLTHSAPEMQAIMIRTDAGNILHTGDWKFDNDPILGKK
ADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNL
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYLKDIAPLISERDVSRFRREELLVI
ATGCQGEPMAATAKLASNSHPSIKLVPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVI
TERDHFVHVSGHPSIDELQKMYSLIRPNICIPVHGEPVHIHEHVKLAKKNGIKQVVEVEN
GSVVLLEPNNAKVISKVENGYLAVDGNYLLPVESPIFKARRRMRESGIVVASVVINKKGL
LAANPMLSMPGLLDPKEDMALVNLIKNDIKELVTIQNKQAKKALSDEQVIEAIKGTIRKT
LKQEINKSPVIIVNLEKAVE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattcaacatcaaaaatcataaaaatgatctgctatttgtaccgctaggggga
tctaatgaaataggtatgaatcttaatctttaccattatcaaggtcaatggttaatgatt
gattgtggtagcggttttgccgatgattatttacccggtgttgatatgataattgctgat
agcagctttatcgagaaatataaaaaagatatagtaggtctgattttaactcatgctcac
gaggatcatttaggtggagtccaatatttatggcatagacttaaatgtcctatttatatt
actacttttacagcaaattttctaaaaattcgtttaaatgaatatgattttgctaaaaat
ataaaaattcatgaagtaaaacccggtagtaaaataaatctagatcctttttccttagag
atggtgccactgactcactcggctcctgaaatgcaagcaattatgatccgtacggatgca
ggtaatattttacatacgggggattggaaatttgataacgatccgatacttgggaaaaaa
gccgatgaggagcttttaaaatcttacggagatgaaggggttcttgcacttgtttgtgat
tcaactaacgtatttaataaaggaagctcaggttctgagggggatgttagaaaaagttta
gtagatattatagccggttgtcctcaaatggtagtagtttcaacctttgcctctaattta
gcacggcttgatacaataattcatgctgcagggcttgcgggtagaaaagtagtcttaacc
ggtagaagtttgcaccgtatgatgcttgctgcgcaggaaagcggctatttgaaagatatt
gctcctctaattagtgaacgtgatgttagcagatttagaagagaagaattattagtaatt
gctaccggttgtcaaggtgagcctatggctgctaccgcaaaactggctagtaattctcat
ccgtctataaagcttgttcctaaggatacaatgattttttcttcaaaaattattccgggt
aatgaaaagaaaatattcaggctatttaatatatttgttaaagccggtgtagaagttatt
actgagcgagaccattttgtacatgtttcaggacatccatcgattgacgagctacaaaaa
atgtattctctaattagaccgaatatttgtatacctgttcacggcgagcctgtacatatt
catgaacatgttaagcttgctaagaaaaacggcataaaacaggtagtagaggttgaaaat
ggtagtgtagtactgcttgaacctaataatgcaaaagtaatttcaaaggttgaaaacggt
tatttagctgttgacggtaattatttgctgcccgttgaatctccgattttcaaagctaga
agacgtatgcgtgagtcgggtatcgtggtagcatcagtagtcattaataaaaaaggacta
cttgctgcaaacccaatgctgtctatgcccgggctgcttgatccgaaagaggatatggca
ttagttaacctcattaaaaacgacattaaagaacttgttaccattcaaaataaacaggct
aaaaaagcattgtcggatgaacaagtaatcgaggcaataaaaggaacaatccgtaaaacc
ttaaaacaagaaattaataagtcacccgttataatagtaaatcttgagaaagctgtggag
tag
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