Rickettsia africae: RAF_ORF0580
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Entry
RAF_ORF0580 CDS
T00979
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
raf
Rickettsia africae
Pathway
raf03420
Nucleotide excision repair
raf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RAF_ORF0580 (uvrD)
03430 Mismatch repair
RAF_ORF0580 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raf03400
]
RAF_ORF0580 (uvrD)
Enzymes [BR:
raf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RAF_ORF0580 (uvrD)
DNA repair and recombination proteins [BR:
raf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RAF_ORF0580 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RAF_ORF0580 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
AAA_12
DUF87
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACP53489
UniProt:
C3PNH9
LinkDB
All DBs
Position
607809..609770
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AA seq
653 aa
AA seq
DB search
MQNQDFIHTLNPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAV
TFTNKAAKEMAERVNSLINCYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQL
KLVKDIVKLKDIDTKKYAPKLIHIIISRWKDQGLLPTKLSVSDTNLPLQRVAKLVYEEYQ
KNLLISNVLDFGDLLLYNNELFIKNSEILRYYQEKYRYILIDEYQDTNVVQYLWARMLAS
LYKNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAASNVIN
NNKNRHGKTLWTDRENGEKIKIISCWSDKEEARYIASEIDNLVRENRYNAGNIAILVRAV
FQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINVPKRA
IGAASLNKIRGYALERNISNFAAIKEMLEIGEIKAKSYETLKDLVTKIDNWYERFSIDAP
INVVKAILDDSGYLEMLQEEKTEEAFGRIENINEMLRAIAEFNDVHDFIEHSSLVMENEV
LETNYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEDGEKGLEEERRIAYVGI
TRAKKDLYITHAESRKIFYEIVRSYPSRFITEIPDEITIRTSSMKKYNSFYKF
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcaagatttcatacatacattaaatccagaacagcaaaaagcagttcttcac
actgaaggaccgcttttattgcttgcaggtgcagggacaggtaaaacaaaggtacttacc
tcaagaatagctaatattattcaccaaaatttagcctcacctcaaaatattctagctgtt
acttttactaataaagctgctaaagaaatggctgaaagagttaatagtctaattaattgc
tatggtcttaatataggtactttccactcaatggcagctaggatattacgtgaccagatt
gagcatttaaatcttggtttaaataatagatttactattattagtcatgatgatcaatta
aaactagtgaaagatatagtaaagctaaaagatattgatactaaaaaatatgctcctaaa
ttaatacatatcataatttctagatggaaagatcaaggattattaccaactaaactatca
gtatcagatactaatttaccgttgcagagggttgcaaaacttgtatacgaagaatatcag
aaaaatttacttatttctaatgttttagattttggagatttgctactttataataatgag
ctttttattaaaaattctgaaatactaagatattaccaagaaaaatatcgatatatttta
attgatgaatatcaagacactaacgttgtccagtatttatgggcaagaatgctcgcaagt
ttatataaaaatatttgctgtgtaggggatgatgatcaatctatttatggttggcgagga
gcagaagtcgggaatatattacgttttgaaaaagattttgcaggtgcaacaattattaaa
ttagagcagaattatagatcaactttgccaatacttgctgctgcttccaatgttatcaat
aataataaaaaccgtcacggtaaaacgttatggacggatagggaaaacggtgaaaagata
aaaattatctcttgttggagtgataaagaagaagcaagatatatagccagtgaaatagat
aatttagtgcgagaaaaccggtataatgccggcaatattgcaatattagtacgagccgta
tttcaaacaagaagttttgaggaagcgtttataaatagtgctatgccttataaaattata
ggtggtttgcggttctatgaacgtatggaaataagagatgtacttgcttatatccgtata
tctttgaatcaaaatgacaatctagcacttgagcgtattataaatgtgccgaaaagggca
ataggtgcagctagcttaaataaaattagaggctatgcacttgagcgaaatatttctaat
ttcgcagccattaaagaaatgctagaaataggtgagattaaagcaaaatcatatgaaact
ctaaaagatttggttaccaaaatcgataattggtacgaaagatttagtatagatgctcca
ataaacgtagttaaagcaatacttgatgattccggttatcttgaaatgcttcaagaagaa
aaaaccgaggaagcattcggtagaatcgaaaatattaacgaaatgcttagagctattgct
gaatttaacgatgttcatgattttatcgaacattcaagcttagttatggaaaatgaagtg
cttgaaaccaattacggtggctctgttactataatgaccctgcacgcagctaaagggctt
gagtttgacgtggtatttttaccgggctgggaagagggggtatttccgtctcaaagatct
ctagacgaagacggcgaaaaaggcttagaagaagaacgccgcattgcttatgtcggtatt
acgagagccaaaaaagacctctacattactcatgctgaaagcagaaaaatattttatgaa
atagtccgttcttacccttcaaggttcataactgaaatccctgatgaaattacgattagg
acctcttctatgaaaaaatacaattctttttataagttttaa
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