Rickettsia africae: RAF_ORF1223
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Entry
RAF_ORF1223 CDS
T00979
Symbol
dnaX
Name
(GenBank) DNA polymerase III gamma and tau chains
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
raf
Rickettsia africae
Pathway
raf03030
DNA replication
raf03430
Mismatch repair
raf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
raf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RAF_ORF1223 (dnaX)
03430 Mismatch repair
RAF_ORF1223 (dnaX)
03440 Homologous recombination
RAF_ORF1223 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raf03032
]
RAF_ORF1223 (dnaX)
03400 DNA repair and recombination proteins [BR:
raf03400
]
RAF_ORF1223 (dnaX)
Enzymes [BR:
raf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RAF_ORF1223 (dnaX)
DNA replication proteins [BR:
raf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RAF_ORF1223 (dnaX)
DNA repair and recombination proteins [BR:
raf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RAF_ORF1223 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
DNAX_ATPase_lid
AAA_22
AAA_14
AAA_5
RuvB_N
AAA_30
AAA_19
AAA_18
AAA_16
AAA_assoc_2
RNA_helicase
TIP49
AAA_24
Viral_helicase1
AAA_17
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACP53991
UniProt:
C3PM01
LinkDB
All DBs
Position
1249861..1251462
Genome browser
AA seq
533 aa
AA seq
DB search
MSFPRKQEFSVKHIQNKFFSLITIVLDINSSNQYIPFARKYRPSNFAELQGQEVLVKVLS
YTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH
NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE
PPPHVIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRI
IAYKSEGSARDAVSILDQAASMSVKSDNIISPQVINQMLGLVDSSVIIEFVECIIYRETE
KAINLINKLYGSSVNLEIFIESAADFIAYLNKVKMLPNYSLPIYESFNDRTKNILDKTSL
PHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTSLPLLTDFDGNNQNLNQSINPE
IKKKFEIVDFLEYLYKNNEIDIYYFLLNHTELKNLSNNRLEFVSLEVTSKIKRQIDDLLA
AFTNEKFEIVIIKEQNKQTLKNQLIGKIEASNDFGLIKKHFPNITISDILLKS
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcccgcgaaagcaggaattctcagtaaaacatatacaaaataaattttttagt
cttataactatcgtgctagatataaattcatcaaatcaatatattccttttgcaaggaaa
tatcgtcctagtaactttgccgagcttcaggggcaagaggtattagtcaaagttttaagc
tatactattttaaacgataggctcgccggaggctatcttttaacaggtattagaggagtc
ggtaaaactacttccgcccgaattattgctaaagccgtcaactgttctgctttaattacc
gaaaatacgactattaaaacatgcgagcaatgtacgaattgcatcagctttaataatcat
aatcaccctgatataatcgaaattgatgcggcaagtaaaactagcgtagatgacatacgt
agaattatagaatccgccgagtataagcccctacaaggtaagcataaaatcttcattatt
gatgaggtgcatatgctctctaaaggggcatttaatgcacttcttaagacactggaagaa
ccaccacctcatgtaatatttatctttgcaacgacggaagtacaaaagatacctgcaact
attatctcaagatgtcaacgttatgatttaaggcggttgagttttgaagagatttttaag
ctacttgaatatataactaagcaagaaaatttaaaaaccgatatagaagcactaagaatt
atagcttacaaatcggaagggtcggcacgtgatgcagtctctattttagatcaagcagct
agtatgtcggtgaaatctgacaatataattagtcctcaagtaattaatcaaatgcttggg
cttgtcgatagttcggttataatagaatttgtcgaatgtattatctacagagagacggaa
aaagctataaatttaataaataaactttacggttcttcggttaatcttgagatttttata
gaatcggcagcagattttattgcttatcttaataaagtaaaaatgttacctaattatagt
ttgcctatatatgaatcatttaatgatagaactaaaaacatattagataaaaccagcttg
ccgcacttatcaatcttatggcaaatatataataagggagtaggggaaataaaaatttcc
tataaccaactaacagaaacggaaatgttagttataaaatctatatattcgacgtcgcta
cccttgcttacagattttgacggtaataatcaaaatttaaatcaatcaattaatccggaa
ataaaaaaaaaatttgaaattgtagattttcttgaatatttatataaaaataatgagata
gatatatattatttcctgctcaatcatacggaacttaaaaatctcagtaataatagatta
gagttcgtaagtcttgaagttacaagcaaaataaaaagacaaatagacgatttgttagct
gcttttactaatgaaaagtttgagatagtaataataaaagagcagaacaagcaaacctta
aagaatcagttaattggtaagattgaagcaagtaacgattttggtttaattaaaaaacat
ttcccaaatataacaatttcggatattttacttaaaagctaa
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