Riemerella anatipestifer RA-CH-1: B739_0306
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Entry
B739_0306 CDS
T02331
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)
Organism
rag
Riemerella anatipestifer RA-CH-1
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
L_protein_N
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
AFR34912
UniProt:
J9R588
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All DBs
Position
323017..326151
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AA seq
1044 aa
AA seq
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MHPYNAISASAGSGKTYTLVIRILSLCLRTPDEKAIRYILALTFTNKAANEMKERILQWL
EAFTKEDYLQNNELKAIQSYLETQGIKLTIEDLHYRSKKVLDYILHHYSILNIGTIDKFN
AKLVRSFSYELGLAQNFNLEINNEPYLIEAVDQLLDKIGEDPKVSEAFMDFVNYNLENEE
RINVNKTLYDRAKTFVNDVHYEELQKNEAFDWEAYDNLKLKLRTQLTQHHNEALQYAKKA
LALINENNLEIKDFQGGANSGLGKFFEEALKFYTGQRDKFPFPSDEEKALERFRKGTASK
DNTVISAVFSILDTLIEWRAIIITNYVTSEKKAKILKELLPLKINKEIREQLEIIENEDD
LVLLSKFNILIKENLREEPSAFIYEKIGTRYQHYFFDEFQDTSKLQWENIIPLRDHTISS
EDHSFTLVGDPKQSIYRFRGGDAEQMLDIINGKEATGVDINLENLENNWRSAQNIVRFNN
ELYAFMAKDLEQEEHRHLFAEQGQQIAKREGLLGRVRVNLVEYDRKDEVFFDEVANQMFE
DIKICLNNGFQFSDICIMCRTKGEIKQLSQRLGLLKVNYKNTETYIKTISEKGLSLDLSK
TLLATIEYLKWENDTANYDSLMRALYHLNSLGKININLFSEEITSLLELKTSDAILEELN
NRYGIGLNHQHYLHLNLYNRIEYLVKQFAVPQQETDFILNFLEEVYAFTQNPGKTLKDFI
KYWDEEASEKSIQSSENIDAIKMMTIHATKGLEYPVVFLPMKNSHKDSSFNDWLSVDLET
LKSVNLSQFKKELLVYDDTLKSFSDENIYKNKIDRYCVQYVATTRPVEQLFLYLQKPSQS
GENKLEILDFVQQFNATDHQFDLYPEENNSYQKQTHKKKSTEINKQSVEITPNTCISSNI
QIATPSKNYQERNEKVRTGIFTHEILSKIKTKNDITPVLSSYLIDGIITKQEKAEIEKTI
LSVVEHHSYSFYFEEIEEVYNERDFMLNGEIFRPDRVVKKNGGYYILDFKTGIPNDKHQN
QILAYKTALEQLDFNVLGTEIIYI
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgcatccatacaacgctataagtgcttcggcaggttcgggaaaaacctataccctcgtt
atcagaatactatctctgtgccttagaacaccagacgaaaaagccatacgctacattctt
gctcttacctttaccaacaaagccgccaacgaaatgaaagagcgtatcttgcaatggcta
gaagcgtttaccaaagaggattatttacaaaacaacgagctaaaagcaatacaatcttac
ctagagacacaagggataaaactcaccattgaagaccttcactaccgttctaaaaaggtt
ttggattatattctgcatcactattctattttaaacattgggacaatagataaatttaat
gcaaaactggtaaggagtttttcctacgaattgggattggcacagaatttcaacctagaa
atcaataacgaaccttacctcatagaagcagttgaccaactattagataaaataggagaa
gacccaaaagtttcggaggcgtttatggatttcgttaattacaacctagaaaatgaggaa
cgaatcaatgtaaataaaacgctttacgaccgagccaaaaccttcgtaaacgatgtccac
tacgaagaattacaaaaaaatgaagcctttgattgggaggcgtatgacaatctgaaacta
aaacttagaacacagcttacacaacaccacaacgaggctttgcaatacgccaaaaaggct
ttagcactcattaacgaaaataatctagaaattaaggatttccaaggcggagcaaattct
gggctaggaaagttttttgaagaagctctaaaattttatactggtcagagagataaattc
ccttttccgtccgatgaagaaaaagctttagagcgcttccgaaaaggcacggcgtctaaa
gacaacaccgttataagcgctgtattttccattttggacaccctcatagaatggagagca
atcatcatcacaaactatgtaacttcggaaaagaaagccaaaattcttaaagaattgcta
ccactcaaaatcaataaagaaatccgagagcaattggaaatcatagaaaacgaagacgat
ttagtacttctttccaaatttaatattctaatcaaagaaaatttacgagaggagccttcg
gcttttatttatgagaaaataggcactagatatcagcattatttttttgatgaatttcaa
gatacttccaaactacaatgggaaaatattatcccacttagagaccacaccatcagctcc
gaagaccacagctttaccctcgtaggcgaccctaaacagagtatctacagatttagaggt
ggcgatgcagagcagatgctagacatcatcaatggtaaagaagcgacaggtgtagacatc
aaccttgaaaatcttgaaaacaactggagaagtgcacaaaatattgttcgttttaataat
gaactttatgcctttatggcaaaagatttggaacaggaagaacacagacacctttttgca
gaacaagggcaacaaatagctaaaagagaaggtctactagggcgagtaagagtaaatcta
gtagaatacgaccgaaaagatgaagttttctttgacgaggtagccaaccaaatgtttgaa
gatattaaaatttgcctaaacaacggcttccaattctcggacatttgtattatgtgccga
acaaaaggagaaataaaacagctatctcaaagactaggattactaaaagtcaattataaa
aatactgaaacctacattaaaaccatttccgaaaaaggcttaagtttagatttatccaaa
acccttttggcaaccatagaatacctcaaatgggaaaacgatactgctaactatgacagc
cttatgagagctttgtatcacctcaatagtttagggaaaattaacataaatttgttctcc
gaagaaatcacaagccttctagaacttaaaacttccgatgcaattttggaagaattaaac
aaccgatacggcattggacttaatcatcagcattacctacatctcaatctttataatagg
atagagtatttggtaaaacaatttgctgtacctcaacaagagaccgattttatactaaac
ttcttagaggaagtctatgcctttacccaaaatccagggaaaactttaaaagattttatc
aaatattgggacgaagaagcctcggaaaaatccatacaatcctccgaaaatatagatgcc
atcaaaatgatgaccatacacgctaccaaaggtttagagtatcctgtggtatttctccca
atgaaaaacagccataaagatagttcttttaatgattggctatcggtagatttagaaact
ttaaaatcggttaatcttagtcaatttaaaaaagaacttttggtgtatgacgatactttg
aaatcattttcagacgaaaacatctataaaaataaaatagaccgctattgtgtgcaatat
gttgccacgacccgacctgtggagcaacttttcctatatctccaaaagcctagtcagtca
ggagaaaacaaactagaaatactagacttcgtacagcagtttaacgctaccgaccatcaa
tttgacctttatccggaggaaaacaattcttatcaaaaacaaacccacaagaaaaaatca
accgaaataaacaaacaaagtgtagaaattacacctaacacttgtatttctagcaatatc
caaatcgcaacaccttctaaaaactatcaagagcgaaacgaaaaagtgcgtacagggatt
ttcactcacgaaattctatccaaaatcaagactaaaaacgacattacgcctgtcctatcc
agctatctgatagacggtattataaccaaacaagaaaaagcagagatagaaaaaaccatt
ctttcggtagtggagcatcactcttactccttttattttgaagagattgaagaagtttac
aacgaaagagattttatgctaaatggagagatttttcgcccagatagagtggtaaagaaa
aacggtggctattacattttagattttaaaacaggaattcccaacgataaacatcaaaac
caaatattagcatacaaaacagctttggagcaattagactttaatgtattaggaactgag
attatttacatctaa
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