Riemerella anatipestifer RA-CH-1: B739_1251
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Entry
B739_1251 CDS
T02331
Name
(GenBank) Superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rag
Riemerella anatipestifer RA-CH-1
Pathway
rag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B739_1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rag03019
]
B739_1251
03400 DNA repair and recombination proteins [BR:
rag03400
]
B739_1251
Enzymes [BR:
rag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B739_1251
Messenger RNA biogenesis [BR:
rag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B739_1251
DNA repair and recombination proteins [BR:
rag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B739_1251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rrf2
zf-CXXC
QueC
Motif
Other DBs
NCBI-ProteinID:
AFR35849
UniProt:
J9R229
LinkDB
All DBs
Position
complement(1340985..1342889)
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AA seq
634 aa
AA seq
DB search
MPLLPEHITKLLYDTLAHFWGYQEFREPQEEIISSIIMGQDTFALLPTGGGKSLCYQLPA
LVLEGTCIVVSPLLALMKDQVYQLKSKGIEAEYLSSELDEAQAEQIYSLCIEGTTKILFV
SPERLTNSLFLQKIEEIKVSFLAVDEAHCISEWGQDFRPSYQNIYKFRKDRLKDLPVLAL
TATATPKVLEDIKSKLNLKTPQIFQKSFERTNIKIHTEECSDKYSRILNLVKNHPYSGII
YTSTRKETQQLTEFLQHNGIPNVDFYHAGLPLKEKHQKQNQWLHSNNGVLVATNAFGMGI
DKDDVRYVIHLSPPSSVENYYQEIGRGGRDGEPAFAYLLWNKYELSNSDEILKQQIPNKE
SFKKAISYLYSLFQIADFELPEQTFQFNIRQWQRVTKMPLASLKNILSFLHNQEIIYYNN
LKSKSSIELNIEVEDFESLAPQDAYFIEMLLRHLSGFSHHKVSFREEHLAHKINTNPTVL
KQRLLELADKDYINYIDGALASIRFLIPRDNASFGGKWWHLFLEIQKNKVQKWEEMKFFV
QSEKYCKMKMILSYFGEKKAQNCGQCSVCLSRKTSLSSAQNPILKVLAIRPCTLEDLSAQ
IPHLSREKLLEQVILLLDTDKIKMLNYKTYTINS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcctacccgaacatatcactaaactactctatgatacacttgcccatttttgg
ggctatcaagagtttagagaaccacaggaagaaattatcagctctatcattatggggcaa
gatactttcgctctcttgcctacaggaggcggaaaatctttgtgttatcagctcccagca
ttagttttagaaggcacttgcattgtggtttctccacttttggctctgatgaaagaccaa
gtatatcaactgaaaagcaaaggtatagaagccgaatatcttagctcagaattagacgaa
gcccaagcagaacaaatctattcactgtgtattgagggaactaccaaaatattatttgta
tctcccgaaaggcttaccaacagtctttttcttcaaaaaatagaagaaattaaagtgtct
tttttagcggtggacgaagcccattgtatctccgagtggggacaagactttcgcccaagc
taccaaaacatctataaatttagaaaagaccgactgaaagatttgcccgttttagccctc
acggctacggctaccccaaaggtattagaggatattaaatctaaactcaatctaaaaaca
ccacaaatcttccaaaagagttttgaacggacgaatattaaaatacacacagaagaatgt
tccgacaaatattctagaattttaaatttggtaaaaaaccacccttattcgggaattata
tatacttctacgagaaaggaaactcaacaactcacagaattcctgcaacataatggaatt
cctaatgttgatttttaccacgctggactgccacttaaagaaaaacatcaaaaacaaaat
cagtggttgcattctaacaatggagttctagtagctaccaacgcttttggaatgggcata
gacaaagatgatgtacgatatgtgatacacctctctccgcctagctcggtagaaaactat
taccaagaaatcgggagaggaggtagagatggcgaacctgccttcgcttatttgttatgg
aacaagtatgaactttctaattctgacgaaatactcaaacaacaaattcctaacaaagag
agttttaaaaaggctatatcttacctctattctttatttcagatagctgattttgaactt
cctgaacagacttttcagtttaacattagacaatggcaacgggttactaaaatgccttta
gcctcgcttaaaaatattttgagtttcctgcataatcaagaaatcatctattataacaac
cttaaatctaaatctagcatagagttaaacatagaggtggaagactttgaaagtctagct
ccacaagatgcttattttatagaaatgttgttaagacatctatctggattttcgcatcat
aaagttagctttagagaagagcatttagctcataaaatcaacaccaaccctactgtacta
aagcaacgcctcctagaacttgccgacaaagactatattaactatatagatggggcttta
gctagtattagatttcttattcctagagataatgcaagttttggtggtaaatggtggcat
ctttttctggaaatacaaaaaaacaaagttcagaaatgggaagaaatgaagttttttgtt
caatccgaaaagtattgcaaaatgaaaatgatattatcttatttcggagagaaaaaggct
caaaattgtggacaatgttcagtttgtttgtcccgtaaaacctcgctatcttctgcccaa
aacccgatactcaaagttttagcaataagaccttgtactttagaagacctctcggcacag
ataccacatctatcgagagaaaagctattagaacaagtgattcttctgctagataccgat
aaaattaaaatgcttaactataaaacttatacaataaactcatga
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