Riemerella anatipestifer RA-CH-1: B739_1765
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Entry
B739_1765 CDS
T02331
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rag
Riemerella anatipestifer RA-CH-1
Pathway
rag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B739_1765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rag03019
]
B739_1765
03009 Ribosome biogenesis [BR:
rag03009
]
B739_1765
Enzymes [BR:
rag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B739_1765
Messenger RNA biogenesis [BR:
rag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B739_1765
Ribosome biogenesis [BR:
rag03009
]
Prokaryotic type
rRNA helicases
B739_1765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFR36349
UniProt:
J9R3B2
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All DBs
Position
1845403..1847010
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AA seq
535 aa
AA seq
DB search
MGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLPILDMIDDTSRKIQLLVLCP
TRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITDQIRSLRDKPQVIVGTPGRVIDLINR
KALDFSSIHWLVLDEADEMLSMGFKDDLETILSETPETKQTLLFSATMNKEVERISKSYL
TNPHRISVGSINAVKKNISHEYYVVNYRQKKEALKRLIDANPNQYSIIFCRTRMEAKEVA
DYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNIDILVATDVAARGLDVDSLTHVIHYSL
PDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKLKHIKVQTQIELKEKSIPKGEDIIKA
QVAGVFEHLFTEHETYFDFDDSLIPDLSQFSKEELVHQLLQFQLRDLALYYKNRNDLSDQ
KLKKEGDIKESRREGRRDKGERSRDRGGRKGKKSNSDMVRFFFNLGKRDQLKKVDMLDII
NKSTKKSKKRADIGDIEILDKFTFFEVEKSFKNEILNNISSMKFKGKEMRAEVAN
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgaaactcctacggagatccaaaaacaaagtattccttttattttatcagat
gttagagatctgatagcactagcgcaaacaggaacagggaagacagcagcgttttcatta
cctatcttagatatgatagatgacactagtagaaaaatccaacttttggtactttgtcct
actagagagctttgcttacaaatagcaaaagacataaaaaattactccaaatatcaacct
aatattaaatctgtagcagtttacggtggtagtagtattacagaccaaattcgtagcctt
agagataagcctcaggttattgtaggaacaccaggtagagtaatagacctaattaacaga
aaggcattagacttttcaagtatccattggctagtattagatgaagcagatgagatgctt
tctatgggctttaaagacgatttagaaaccattctaagcgaaacaccagaaaccaaacag
actttactcttttcagcgacgatgaataaagaagttgaaaggatttctaaaagttacctt
accaatcctcatcgtatttctgtaggttctatcaatgctgttaagaagaatatcagccac
gaatattacgtggtaaactatagacagaagaaagaagcacttaagcgccttatagatgct
aatcctaatcaatattccattattttctgtcgtaccagaatggaagctaaagaagtagct
gactatctaatgcagaatggctatgccgctgatgctttacatggagatttatctcaagca
caaagagatacagtgatgctgaagtttagacttaaaaatattgatattttagtagctaca
gatgtggcggctagagggttggatgtggactcacttactcatgtgattcactactcttta
cctgatgatcctgaagtttttgttcatagaagtggtagaacggggcgtgcagggaaagat
ggtatttctatggctcttataaagcctgaagaaacaagaaagctgaaacatattaaagtt
caaacacaaatagaacttaaagaaaaatcaatccctaaaggagaagatatcattaaagcc
caagtagcaggagtatttgagcatttgtttacagaacatgaaacttattttgattttgat
gatagtcttattcctgatttatcgcagttttcaaaagaggaactggtgcatcagttgtta
caatttcagttgagagatttagctttatactataaaaataggaacgacttatcagaccaa
aaattaaaaaaagaaggtgatatcaaggaaagccgtagagagggtagaagagataaggga
gaaagaagtagagatagaggaggaagaaaaggtaaaaaatccaattctgacatggtaaga
tttttctttaatttaggaaaaagagaccaattaaagaaagtagatatgttggatattatt
aataaatcaactaaaaaatccaagaaaagagctgatattggggatattgaaattttggat
aagttcacattctttgaagtagagaaatcattcaaaaacgaaatccttaacaacatttct
tctatgaaatttaaaggcaaagaaatgagagctgaagtggctaattaa
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