Riemerella anatipestifer RA-CH-1: B739_1880
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Entry
B739_1880 CDS
T02331
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rag
Riemerella anatipestifer RA-CH-1
Pathway
rag03420
Nucleotide excision repair
rag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B739_1880
03430 Mismatch repair
B739_1880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rag03400
]
B739_1880
Enzymes [BR:
rag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B739_1880
DNA repair and recombination proteins [BR:
rag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B739_1880
MMR (mismatch excision repair)
Other MMR factors
B739_1880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFR36464
UniProt:
J9R3L3
LinkDB
All DBs
Position
complement(1963182..1965452)
Genome browser
AA seq
756 aa
AA seq
DB search
MVLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFTNKAAREMKERIAKVVGESDAKSL
WMGTFHSVFARILRSEAHYLGFPSNFTIYDSQDALNVLKKVIKDLNIDSDLYKPKKVQAR
ISQYKNNLITVRAYYNNPELMENDARANMKLIGQIYQKYVEVCFKNGAMDFDDLLLRTNE
LLTRFPEVLAKYQDRFRYILVDEYQDTNHSQYLIVKALASKFENICVVGDDAQSIYSFRG
ANIHNILNFKKDYPDAVTVSLEQNYRSTQNIVNAANVVIAKNQQQFKKNVFSANEEGEKL
KVYRSLSDADEANFVAANIWELHNSQQRMFNEFAILYRTNSQTRAFEDALRRKNIPYRVY
GGLSFYQRKEVKDLLAYLRLLVNENDAEALTRIINYPVRGIGETTQNKLIVYADGQGLSL
AQVLSDLPFHTPRLGLNNSALNKLNDFWQMIKAFQVMLKTENAYTVAMEVAKRSGLIKNL
KDDQTPEGISRLENIQELMNSMQGFIEEQQQLEEGDASLSNFLENIALSADTQDKPDGSE
DMVSLMTIHLSKGLEFPVVHLVGLEENLFPSFMSSSSREELEEERRLFYVALTRAEKQAY
LSYAVSRFQWGKITDSEPSRFLSEIDAQYLDFLNASMERRFVNHSGIKSNIFDDTPSAPI
TFKKKEPKKTINRTETSFQPKEPKKLKPLASAKINNPVGGTTQDIQVGDRVRHDRFGMGE
VIFIDGTDATNIKAKVRFEHEGEKNLILKFARLEKL
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggtattggcaggagctggttctggtaaaacgcgtgtgcttacgatgcgtattgcacat
ctaatcaccaatggagtagacccttttaatatacttgcacttacctttaccaacaaagcc
gctagagaaatgaaagagagaattgccaaagtggtcggagaaagcgatgctaaaagtcta
tggatggggactttccactcggtttttgcaagaatattgaggagcgaggctcattactta
ggatttccttccaactttaccatttacgactctcaagatgctcttaatgtacttaaaaaa
gtcattaaagaccttaatatagactctgatttatacaaacctaaaaaagtacaagccaga
atctctcaatacaaaaacaatctcatcaccgtaagggcttactataacaatcctgaactt
atggaaaacgatgcccgagcaaatatgaaactcattgggcaaatttatcagaaatatgtg
gaggtttgttttaaaaacggagcgatggattttgatgacttgcttttgagaaccaacgaa
cttctcacgcgtttccccgaagttcttgcaaaatatcaagacagatttagatacatttta
gtagatgagtatcaagataccaaccattctcaatatcttattgtaaaggcgttagcctcc
aaatttgaaaatatttgtgtcgtgggagatgatgcccaatctatttactcttttagagga
gctaatattcataacattctgaactttaaaaaagattatccagatgccgtaacggtttca
ctagagcaaaactaccgttctacacagaatattgtaaatgctgctaatgtggtgattgct
aaaaaccagcaacagttcaaaaagaatgtatttagtgctaatgaagaaggcgaaaaactt
aaagtttaccgttcactttcagatgccgacgaagccaactttgttgccgccaacatttgg
gaactgcacaactctcaacaaagaatgttcaatgagtttgctattttatatagaacaaac
tctcaaaccagagcttttgaagatgctttaaggcgaaaaaatattccataccgtgtctat
ggcggattgtctttttatcaaaggaaagaggttaaagatttactagcctatctaagactt
ttggtaaacgaaaacgatgccgaggcactcacaagaatcatcaactatcccgtgagaggc
ataggcgaaactacacaaaataaacttattgtttacgcagatgggcaagggttatcttta
gctcaagttctatcagatttaccatttcacacacctagattagggcttaataattcggct
ctcaataagctaaatgatttttggcaaatgataaaggcattccaagtgatgcttaaaacc
gaaaatgcttataccgttgcaatggaggtagctaaaagaagtgggctcatcaaaaaccta
aaagacgaccaaactccagaaggaatttctaggttagaaaacatacaagaattgatgaac
tcaatgcaagggttcattgaggagcagcaacaacttgaagaaggtgatgctagtctttct
aactttttagaaaacattgccctttcggcggatactcaagacaagccagacggcagtgag
gatatggtttctctgatgacgatacacctttccaaagggctagagtttcctgtggtacac
ctcgtggggttagaggaaaacctgttcccgagttttatgagcagtagctcccgagaagaa
ttggaggaggagcgaagactcttctatgtagctttaactcgtgccgaaaaacaagcctat
ctttcttatgcggtttctcgtttccaatggggaaaaattacagactcggagccgagcaga
tttcttagcgaaatagatgctcaatatttagacttccttaatgcaagtatggaaaggcgt
tttgtaaatcattcagggattaaatctaatatttttgatgataccccatcagctccaatc
acttttaaaaagaaagaacctaagaaaaccatcaatcgtacagaaacgagttttcagccc
aaagaacctaaaaaactaaaaccgttagcatcagctaaaattaacaatcctgttggtgga
acaacgcaagatatacaagtaggcgatagggtaagacacgacaggtttggtatgggagaa
gttatttttattgatggaactgatgctaccaacattaaagcaaaagttcgctttgaacac
gaaggcgaaaaaaacttgattttaaagtttgctagactagagaagctctaa
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