Roseibium aggregatum: QUB73_00020
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Entry
QUB73_00020 CDS
T11280
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ragg Roseibium aggregatum
Brite
KEGG Orthology (KO) [BR:
ragg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ragg03032
]
QUB73_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
ragg03400
]
QUB73_00020 (gyrB)
Enzymes [BR:
ragg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
QUB73_00020 (gyrB)
DNA replication proteins [BR:
ragg03032
]
Prokaryotic type
DNA Topoisomerases
QUB73_00020 (gyrB)
DNA repair and recombination proteins [BR:
ragg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QUB73_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WJS02698
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Position
4175..6628
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AA seq
817 aa
AA seq
DB search
MSDTSTPESSPTPETNGGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV
DNAIDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHSEEGVSAAEVIMTQLHAGGKF
DQNSYKVSGGLHGVGVSVVNALSTKLELRIWRNGEEHSMTFAHGDAQAPLKVVGPANGRK
GTEVTFLPSPETFTKTEFDFSTLEHRLRELAFLNSGVRIILTDKRGVEDKVEELFYEGGL
EAFVRYLDRAKHPLIEEPINMRAERDGITVEAAMWWNDSYHEHVLCFTNNIPQRDGGTHL
AGFRAALTRQVTGYAEATGLMKKEKVNLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVS
SEVRPVVENLISQILSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRKGALDIAS
LPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKML
SSNEIGTLITALGTGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELI
ENGYIYIAQPPLYKVKRGQSEQYLKDQKALEDYLIGQGLDEASLTLANGEVRTGQDLRAV
AETARTISDIFDGLHSRYNRDVVEQAAIAGALTPEILDDQGKAEEAAAYIARRMDILADE
FERGWTGEARDDGSLVFKRMVRGVQEAATIDAALLGSTDARRLAAHAAHLNEIYGKAAVL
RRKDISTEIRGPRALLNQIYAAGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV
READDADDIFTKLMGDEVDPRREFIQENALAVANLDI
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgtccacgcctgagagcagcccgacccccgaaaccaatggcggtgccgaa
tatggcgccgacagcatcaaggtcctcaagggcctcgatgccgtgcgcaagcggcccggc
atgtatatcggcgacaccgatgacggctccggtctgcaccacatggtctacgaggtggtc
gacaacgccatcgacgaagcgctggccggccatgccgaccatgtgaccgtgacgctcaac
ccggacggatcggttacggtatccgataacggccgcggaattccgacggacctgcactcg
gaagaaggcgtgtcggctgccgaggtcatcatgacccagctgcacgcgggcggtaaattc
gaccagaactcctacaaggtctccggcggattgcacggcgtgggcgtttccgtggtcaat
gcactgtcgacaaagctggaactgcgcatctggcgcaacggcgaagaacactccatgacc
tttgcccatggcgatgcccaggcaccgctcaaggtggttggcccggccaacggtagaaaa
gggaccgaggtgaccttcctgccgtcaccggaaaccttcacaaagaccgagttcgatttc
agcacgcttgaacaccggctgcgcgagctggccttcctcaactccggcgtccgcatcatc
ctgacggacaagcgcggcgttgaggacaaggtcgaggagctgttctatgaaggcggcctg
gaagcgttcgtgcgctatctggaccgtgccaaacatccgttgatcgaggagccgatcaac
atgcgggccgagcgtgacggcatcacggtcgaagccgccatgtggtggaacgacagctat
catgagcatgtgctgtgcttcaccaacaacattccgcagcgcgatggcggtacccacctt
gccggtttccgggctgcgctgaccaggcaggttaccggctatgcggaagcaaccggcctg
atgaaaaaggaaaaggtgaacctttccggcgatgactgccgcgaaggcctgacctgcgtt
ctttccgtcaaggtgccggatccgaaattctcgtcccagaccaaggacaagctggtttcc
tccgaagtgcgtccggtggtcgaaaacctgatctcgcagatcctgagcgaatggcttgag
gaaaaccccgccccggccaagacgatcgtctccaaggtggtggaagcggcctccgcgcgt
gaagccgcccgcaaggcacgcgagctgacgcgccgcaagggcgccctcgacatcgcctcc
ctgcccggcaagcttgccgattgccaggagcgcgacgcctccaaggccgaactcttcctg
gtggagggtgattccgcaggcggctcggccaaacagggccgtcaccgcgaaaaccaggcc
gtgctgcctctgcgcggcaagatcctcaacgtggaacgggcacgctttgacaagatgctg
tcctcgaacgaaatcggcacgctgatcacggcgcttggcaccggcatcggcaaggaagaa
ttcaacgtcgagaagctgcgctatcacaagatcatcatcatgaccgatgctgacgtggac
ggcgcgcacattcgcaccctgctgctgacgttcttcttccgccagatgccggagctgatc
gaaaacggctacatctatattgctcagccaccgctctacaaggtcaagcgcggccagtcc
gagcagtacctgaaagaccagaaggcgcttgaagactatctgatcggacagggtctggac
gaagcttcgctgacgcttgccaacggcgaggttcgcaccggtcaggaccttcgtgccgtc
gctgaaaccgcacggaccatttccgacatcttcgacgggttgcattcacgctacaaccgc
gatgttgtcgaacaggccgcgattgcaggtgcgttgacaccggagatcctggacgatcag
ggcaaggctgaggaagctgccgcctatatcgcccgccggatggacatcctggccgacgaa
ttcgagcggggctggaccggcgaagcgcgggacgacggcagccttgtgttcaaacggatg
gttcgcggcgtgcaggaagccgcaacgattgacgctgccctgcttggctccacggacgca
cgccgtcttgcagcacacgcagcccatctgaacgagatctacggcaaggccgccgtcttg
cggcgcaaggatatctcgacggaaattcgggggcctcgcgccttgctgaaccagatctac
gccgccggtcagaagggtatctcgctgcagcgctacaagggtctcggcgagatgaacccg
gaacagctctgggaaacgacactcgacccgaatgtccgctccctgctgcaggtgaaggtg
cgcgaggcggacgacgccgacgacatcttcaccaaactgatgggagacgaagtcgatcca
cggcgcgaattcatccaggaaaatgccctggccgtggccaaccttgacatctaa
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