Roseibium aggregatum: QUB73_14495
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Entry
QUB73_14495 CDS
T11280
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ragg Roseibium aggregatum
Pathway
ragg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ragg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QUB73_14495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ragg03019
]
QUB73_14495
Messenger RNA biogenesis [BR:
ragg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QUB73_14495
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
WJS00388
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Position
3132580..3134265
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AA seq
561 aa
AA seq
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MASAKKNNSNNDIVFLPLGGVGEIGMNLGLYGYGPEDDRTWLIVDCGVSFAGPELPGIDV
VVPDIKFLEDEVDNIAGMVITHAHEDHYGGILHLWPFLKVPVYATAFTAGLLAAKTESEP
GAEEVPVTVVKQGERHKIGPFDVEFVAMAHSIPEPCALAIRTPAGMVLHTGDWKIDRTPG
VGLPIDLDRLAELGREGVMALVCDSTNAIRDGVSPSEADVAVELKKVMAKASKRIAVTTF
ASNVARIRAIAEAAAANDRDMVIVGRSMHRVIEVAGELGYLDGLKPFHDEEAYGYLPREK
TVLLCTGSQGEARAALARIAAGDHRNIALSKGDMVIFSSRTIPGNEKAVGEVLNNLADKD
VDIITDRDALVHVSGHPRRGELEQLYKLVQPKVLLPVHGEPLHLAAHAAFAKDLGVPEVV
RGKNGDIIRLSAGRAGIIDEAPSGILVKDGDILDDPEVTGVKERRKLSFAGAAVIALVVN
RSGELLDDPNVVLLGLPDTDDEGDPMEDIVIKAVRGAVTSIPKNRRKDKDLVAEAARRAA
RSEILNVWGKKTLCKVMVTQL
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggccaagaaaaacaacagcaacaacgacatcgtgtttctgcccctgggcggg
gtcggcgaaatcggcatgaacctcggtttgtacggctatggtccggaagatgaccggaca
tggctgatcgtcgattgtggtgtgagtttcgccggaccggagcttccgggcatcgacgta
gtcgttccggacatcaagttcctagaagatgaagtcgacaatatcgctggcatggtgatt
acccacgcacatgaagaccattacggcgggatcctgcatctgtggcccttcctgaaggta
ccggtctatgcaacggccttcactgccggtctgctcgcagccaaaacggaaagcgagccg
ggagcagaagaggttccggtgacggtggtgaagcagggcgagcgccacaagattggtccg
tttgatgtcgaatttgttgcgatggcgcactccattccggagccctgcgcgctggcgatc
cgcacgcctgccggcatggtgctgcataccggcgactggaagatcgacaggacgccaggc
gtcggccttcccatcgatctggaccggcttgccgagctcggccgggaaggggtgatggcg
cttgtctgtgacagtaccaatgcaattcgtgacggtgtcagccccagcgaggcagatgtt
gctgtcgagctgaaaaaggtgatggcaaaggccagcaagcgaattgcggtcaccaccttt
gcatccaacgtcgcccgcattcgggcgattgcggaagcagccgccgcgaacgaccgcgac
atggtgattgtcggccgctctatgcaccgggtgatcgaggttgccggagagcttggctat
ctggatggactgaagccgtttcacgatgaagaggcctatggctacctgccgcgggaaaag
accgtgcttttgtgcacgggatcgcaaggcgaagcccgcgctgccctcgccaggatcgca
gccggcgaccatcgcaacatcgcgctgtcaaagggcgatatggtcatcttttcttcgcgc
acgatccccggcaacgagaaagccgttggtgaggtactgaacaaccttgccgacaaggat
gtcgacatcatcaccgaccgtgacgcccttgtgcatgtgtccggtcacccgcgcaggggc
gagctggagcagctttacaaactggtccagccgaaagtcttgcttcccgtccacggggaa
ccgttgcatcttgccgcccacgctgcgttcgcaaaggacctcggggtgcctgaagtggtg
cgcggcaagaacggggacatcatccgcctgagtgcggggcgtgccggcatcatcgacgag
gcgccgtcaggcatcttggtgaaagacggcgatatcctggacgatccggaagtcaccggc
gtcaaggaacggcgcaagctttcgtttgcgggcgctgcggtgatcgcgctggtggtcaac
cgatccggggagctgctggacgaccccaatgttgtcctgttgggcttgccggacacggat
gatgaaggtgatccgatggaggacatcgtcatcaaggctgtcaggggcgctgttaccagc
atcccgaagaaccggcgcaaggacaaggatctggttgcggaggctgcgcgccgtgcagcc
cggtccgagatcctgaacgtctggggcaaaaagacgctctgcaaggtgatggtgacccaa
ctatag
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