Roseibium aggregatum: QUB73_23015
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Entry
QUB73_23015 CDS
T11280
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ragg Roseibium aggregatum
Pathway
ragg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ragg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QUB73_23015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ragg03019
]
QUB73_23015
Enzymes [BR:
ragg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QUB73_23015
Messenger RNA biogenesis [BR:
ragg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QUB73_23015
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WJS02013
LinkDB
All DBs
Position
complement(5039821..5041125)
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AA seq
434 aa
AA seq
DB search
MTDFQSLGLSNGLVTAVTENGYDAPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPL
IDRLLLEKKRAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIK
RLSKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADK
RQTLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNDKGDFLVDQL
RDKPDGLSLVFCRTKHGAERLMRKLAHSGISAGSIHGNKSQNQRDRAIKDLREGTINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQI
EKLIGIDITVAGGEIPPMSAAAGRAKRGGNRNGNSKPGGKKPFRKQSSSGANDNASENRR
PPRRRRQNTRRDAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgactttcaaagcctgggactctccaatggccttgtgactgccgttaccgaaaac
ggctatgacgctccgacaccgatccagcaaaaagccatcccgttgatcctggaaggccgg
gatctcatgggtctggcacagacgggtacgggcaagacggcggctttcggcctgccgctg
atcgaccggctcctcctggagaagaaaagagcggttcccaagggcacacgggcgctgatt
ctggccccgacccgcgaactggtgaaccagatcgcaaagaacctgatttccttcctgaag
catacgccgctgcgggtttcctccgttgtcggtggtgtgtccatcaatggccagatcaag
cggctctcaaagggcaccgacattctggtggcaacaccgggccggctgctggacctggta
gatcgtgaagcgatcgacctgcgcaccgcttcctacctggtgctcgacgaagccgaccag
atgctcgatctgggcttcattcatgccctgcgccggatcgcgggcctggtggccgacaag
cgccagaccttgctgttctccgcaaccatgccgaagcagatcaacgagctggcacagtcc
tatctgcgcaacccggagagggtcgaagttgctccggccggcaagaccgctgacaaggtt
acccagtcagttcatttcatggacaagaacgacaagggcgacttcctggttgatcagctt
cgtgacaagccggacgggctgtcgctggtgttctgccgcacaaagcacggtgcggaacgg
ctgatgcgcaagctggcgcattccggaatttccgctggctcgatccatggtaacaagagc
cagaaccagcgtgaccgcgcgatcaaggatctgcgggaaggcaccatcaacgtgctcgtg
gcaaccgatgttgccgctcgcggcattgatatcccgggtgtcagccacgtttataacttc
gagctgccggaagttgcggaagcctacgttcaccgaattggccgtacggcccgcgccggt
gcggaaggtgaggcgattgccctgtgtgctccggaggaaatcggtctcttccgccagatc
gagaagctgatcggtatcgatatcacggttgccggtggtgaaattccgccgatgtccgcg
gctgccgggcgcgcaaagcgcggcggaaaccggaatggcaacagcaagccgggcggcaag
aagccgttccgcaagcagtcgtcctccggcgccaacgacaacgcgtccgaaaaccgtcgt
cctccgcgtcgccgtcgtcagaacacacgcagagatgcagcctga
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