Rahnella aceris Y9602: Rahaq_2937
Help
Entry
Rahaq_2937 CDS
T01422
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rah
Rahnella aceris Y9602
Pathway
rah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rahaq_2937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rah03400
]
Rahaq_2937
Enzymes [BR:
rah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rahaq_2937
DNA repair and recombination proteins [BR:
rah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rahaq_2937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
DUF6007
OAR
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADW74532
UniProt:
A0A0H3FHZ9
LinkDB
All DBs
Position
3187655..3191098
Genome browser
AA seq
1147 aa
AA seq
DB search
MSQDYRYSLPERPGDNRLLGQLTGSACALECAQISERHTGPILLIAPDMQNALRLRDEIQ
QFTDNKVLSIADWETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPH
EFLHGHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRIFDVDTQRTLSEVEHINLLPAHEFPTDKNAIELFRSQWREKFEVRRD
AEHVYQQVSKGTFPAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDAC
QRYESRRVDPMRPLLEPENLWLRVESLFTELKAWPRVQLRTDSLPKKAANTNLSYEKLPD
LSVQPQNKAPMDNLRRFNESFAGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEEADI
AGRYIMIGACERGFLDADKQLALICESDLLGERVARRRQDSRRSINTDTLIRNLAELRPG
QPVVHVEHGVGRYLGLTTLETGGITAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESA
PLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKSGFAFKHDKAQYQLFCQAFPFE
TTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTL
LAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGTHKLLQTDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRMAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKASQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMTSIGFSLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEDFIPDV
NTRLSLYKRIASAKTEGELDELRVELIDRFGTLPDGARNLLLIAVLRLKAKELGIRRIEG
NERGGFIEFGDKNRVDPGFLIGLLQKQPQVYRLDGPTKLKFVLDLTDRPKRLKFVGDMLN
EFTEHLI
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagattatcgttattcgttgcctgaacgcccgggcgacaaccgcctgttaggc
cagcttacaggctccgcctgcgcgctggaatgcgcccaaatcagtgaacgccatacaggc
ccgatcctgctgattgcgcctgatatgcaaaatgccctgcgcctgcgcgatgaaattcaa
cagtttactgacaacaaagtcctgagtattgcggactgggaaacgctaccttacgacagt
ttttctccacatcaggaaattatttcttcacgcctttccagtttgtatcagcttcctact
atggaacgcggcatcattattctgccggtgaatacgctgatgcaacgcgtctgcccgcac
gaattcctgcacggtcacgcgctggtgatgaagaaaggtcagcagctttcgcgcgataaa
ttgcgtgcacagctggaacaggccggttatcgcagcgtagatcaggtgatggagcacggc
gagtttgccacccgtggcgctctgctggatttgtatccgatgggcagcgaagaaccttat
cgcattgatttctttgatgatgaaatcgacagcctgcgcattttcgatgtggatacccag
cgcacgctgagtgaagtggaacatatcaatctgctacccgcgcacgaatttccaaccgat
aaaaatgccattgaactgttccgcagccaatggcgcgagaagttcgaagtacgtcgcgat
gccgaacacgtttatcagcaggtcagtaaagggaccttccccgccggtatcgaatactgg
cagccgttgtttttcagtcagccgctgaccacgctgttcagctatctgccggaaaacacg
ctggtgctgaataccggcgatctcgaagccgccgccgagcgcttctggcaggacgcctgc
cagcgttacgaaagccgccgggtcgatccgatgcgtccgctgctcgagccggaaaatctc
tggctgcgtgtggagtcgctgtttaccgagctgaaagcctggccacgtgttcagctgcgt
actgattcgctgccgaagaaagccgccaataccaatctgagttacgaaaagctgccagat
ttatccgttcagccgcagaataaagcgccgatggataacctgcgtcgctttaatgaatcc
tttgccggcagcctggtattctctgtagaaagtgaaggccgccgcgaaacgcttcaggat
ttgctggcacgcatcaagctgatgccgacgcttatcacccggattgaagaagccgatatc
gccggtcgttacatcatgatcggcgcgtgcgaacgtggttttctggatgcggataaacag
ctggcgctgatttgtgaaagcgatctgcttggtgaacgcgtggcgcgtcgccgtcaggac
agccgacggtcgatcaacaccgatacactgatccgtaatctcgccgaactgcgtcccggc
cagccggtagtgcatgtcgaacacggcgtgggccgttatctcgggctgacaacgcttgaa
accggcggcatcactgccgaatacctgatactgacctacgccggagaagacaaactgtat
gtgccggtatcatcgctgcatctcatcagccgctatgccggtggcgcggatgagagcgcg
ccgctgcataaactcggcggtgaagcctggtcaaaagcgcggcagaaagcggccgagaaa
gtgcgcgatgtcgctgcggaactgctggatatctacgcccagcgcgaagccaaaagtggt
ttcgcgtttaagcacgacaaagcacagtatcagctgttctgtcaggctttcccgtttgaa
accacgccggatcaggcacaggccattaacgcggtactgactgacatgacccaaccgctg
gcgatggaccggctggtatgtggcgacgtcggtttcggtaaaaccgaagtggcgatgcgc
gcagccttcctcgccgtttccaacaataagcaggtggccgttctggtaccgaccaccctg
ctggcacaacagcacttcgataacttccgcgaccgcttcgccagctggccagtgcgcatc
gaaatgatgtcgcgtttccgcagcgccaaagaacaaaacgtcgtgctggaagatgcagtt
gaaggcaaagtcgatattattatcggcacacacaaactgctgcaaaccgatctacgctgg
aaagatctgggactgctgattgtcgatgaagagcaccgtttcggcgtacgtcataaagag
cgcatcaaagcgatgcgtgcagacgtagatattcttaccctgaccgcaacgcctatcccg
cgtacgctgaacatggccatgagcggcatgcgcgacctgtcgattattgccacaccgcct
gcacgtcgtatggcggtgaaaacctttgtgcgcgagtacgacagtctggtcgtgcgtgag
gcaatcctgcgtgaaattctgcgcggcgggcaggtttattatctctacaacgatgtcgag
aatatcgagaaagcctcgcagcggctggccgaactcgtgccggaagcgcgcattgccatc
ggccacggtcagatgcgtgaacgcgacctcgagcgtgtgatgaatgatttccatcaccag
cgtttcaacgtgctggtgtgtaccaccattatcgaaaccggtatcgatatcccgacggcg
aacacaatcattattgagcgcgccgaccactttggtctggcgcagttgcatcagttgcgt
ggccgcgtagggcggtcacaccatcaggcctatgcgtatctgctgacgccgccaccgaaa
gccatgtcggccgatgcacataaacgtctggaggccattgcctcgctggaagacctgggt
gccggttttgcgctggcgacgcacgaccttgaaatccgcggtgctggcgaactgctcggc
gaaggccagagcggccagatgaccagtatcggtttctcgctgtatatggagttgctggaa
aacgccgtcgaagcgttgaaagaaggccgcgagccatcgctggaggatttaaccaccagc
cagaccgaagttgaaatgcgcatgcctgcgctgctgccggaggatttcattcctgatgtg
aatacgcgcctgtcgttgtataaacgtatcgccagtgcgaaaaccgaaggcgaactggat
gaactccgcgttgagctgatcgaccgttttggcacactgccggacggtgcgcgcaatctg
ttgctgattgccgtgctgcgcctgaaagccaaagaactcggcatccggcggattgaaggc
aacgagcgcggcggattcattgagtttggcgataagaaccgtgtggatccgggcttcctg
attggtctgttacagaaacaaccccaggtttaccggctggacggcccgacaaaactgaag
tttgtgttagatctgactgatcgcccgaaacgcctgaagtttgtcggtgacatgctgaat
gagtttactgagcatctgatctga
DBGET
integrated database retrieval system
