Rahnella aceris Y9602: Rahaq_2963
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Entry
Rahaq_2963 CDS
T01422
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rah
Rahnella aceris Y9602
Pathway
rah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rahaq_2963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rah03019
]
Rahaq_2963
03009 Ribosome biogenesis [BR:
rah03009
]
Rahaq_2963
Enzymes [BR:
rah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rahaq_2963
Messenger RNA biogenesis [BR:
rah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rahaq_2963
Ribosome biogenesis [BR:
rah03009
]
Prokaryotic type
rRNA processing factors
Rahaq_2963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADW74557
UniProt:
A0A0H3FI17
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All DBs
Position
3213958..3217242
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AA seq
1094 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLTFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYHVLRVRKGEEISALSYLLPQIHEAEMLQPSEELPTERRRPEQPALAAFALQSEAPP
SSFEQAAVTEEPVKTRTATVNAPATPVAEKSGFVSRLLSGLKSLFAPEPQQEVKPVEAPQ
ETPEATETENRRNNERRNQRRQGGRRDRNGERGERNDRGNRGERGEGRDNNRDNRGESRD
TRENNREQRDDQQRRGRRNQEQVVTETRSEEVETVAREEQQQQPRRERSRRRSEDKRKPQ
TEEKVQDVAVVEQVAAPVVADDTEQEDRQPTQRRQRRQLSHKIRFESEAEVDHEEEAAAQ
LLITGTRPAAPAIAEQEPSDAETANVADSEDNQNDNARENGMPRRSRRSPRHLRVSGQRR
RRYRDERYPTQSPMPLAGAFVSPEMASGKVWVTYPVAQSSEQQVTETETPEVLTEQVEIA
QANTPVISDITEVTQQPVAEPVNDVVDAAPQEVPAEIAAADVAQPVADEPVLVEPATAEP
VAETPVVDVAPEALEPAIVEPTDVLAASEVQAPAPVAEPEVKAEPVAEVKPAVETAPVAA
APAGTEAAVVAPRFKHLATAPMTKAPAPAYVPEPPRHSDWIRPEFNFEGKGSAGGHAAAT
TATAPATKPEMPAE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgcgttgccctcgtagat
ggacagcggctgtatgatttggatattgaaagtccgggccatgagcagaaaaaagcgaat
atttacaaaggtaaaatcacccgcattgagccaagtctggaagcagcattcgtagattac
ggcgcggaacgacatggtttcctccctctgaaagaaatttcccgcgaatatttcccaagc
aattattcttcccatggccgcccgaacatcaaagatgtgttgcgcgaaggccaggaagtc
attgttcaggtagataaagaagagcgtggaaataaaggcgcagcactgacgacgtttatc
agtctggccggtagttatctggttctgatgccaaacaatccacgcgcagggggtatttcc
cgccgtattgaaggcgatgaccgtactgaactgaaagaagccttgtcttccctgcaactg
cctgatggcatgggactgattgtgcgtactgccggtgtcggtaaatccgcagaagctctg
cagtgggacctgactttccgtcttaagcattgggatgcgatcaagaaagccgctgaaggc
cgccctgcgccattcctgatccatcaggaaagcaacgttatcgttcgtgcgtttcgtgat
tacctgcgcccggacatcggtgagatcctcatcgataacccgaaagtcctcgagctggca
aaagaacatattgctgctctgggtcgtcctgatttcagcagcaaaattaagccgtatgtt
ggcgaaattccgctgttcagtcattaccaaatcgaatcgcagattgaatccgctttccag
cgcgaagtccgtctgccttccggtggctctattgttatcgacagcaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgatatcgaagaaaccgcattc
aacaccaaccttgaagctgcagatgaaattgcccgtcagttacgcctgcgtgacctcggt
ggtctgattgttatcgacttcatcgacatgacacctgttcgccatcagcgcgaagtagaa
aaccgtctgcgtgatgccgttcgtcaggaccgcgcccgtattcaaatcggtcgcatttcc
cgtttcggtttgctggaaatgtcccgtcagcgcctcagcccgtcattgggtgaatcaacg
caccatatctgcccgcgttgtgcaggtactggtaccgtccgtgacaacgaatctctgtca
ctgtcgattctgcgcttgatcgaagaagaagcactgaaagaaaatactaaagaagtgcat
gccatcgttccggtgccaatcgcttcttacttgctgaacgaaaaacgtgaatcggtgaat
gccatcgagaaacgtcagggtggtgtgcgtgcagtgatcgtgcctaacgatcagatgcaa
actccgcactaccatgttcttcgcgttcgtaaaggcgaagaaatttctgcactgagctat
ttgctgccacagattcatgaagcggaaatgctgcaaccttcagaagagttgccgactgaa
cgtcgtcgtcctgagcaaccggcactggctgcgtttgcgctgcaaagcgaagcgcctcca
tccagctttgagcaggcagcagtgaccgaagaaccggttaaaaccagaacggcaacagtt
aatgcgcctgcgacacctgttgctgagaaatcagggtttgtcagccgccttctgagtggt
ttgaaaagcttgttcgcaccggagccacagcaggaagttaaacctgttgaagcaccgcaa
gagacgccggaagctactgaaacggaaaaccgtcgtaacaacgaacgccgtaatcaacgc
cgccagggcggacgtcgtgatcgcaacggagaacgcggtgagcgcaatgaccgcggtaat
cgtggtgaacgtggcgaaggtcgtgacaacaatcgtgataatcgtggtgaaagccgtgat
acccgcgaaaataatcgcgaacagcgtgatgatcagcagcgccgtggccgccgtaatcag
gaacaggttgttaccgaaacccgtagcgaagaagttgaaactgtcgctcgtgaagaacag
cagcaacagcctcgccgtgaacgttcgcgtcgccgttctgaagacaagcgtaaaccacaa
actgaagagaaagttcaggatgtcgcagttgtcgaacaagttgctgctccggtggttgcc
gatgacactgagcaggaagatcgtcagccaactcagcgccgtcagcgtcgtcagttgtcg
cataaaatccgtttcgaatctgaagcagaagtagatcatgaagaagaagctgcagctcag
ttattgatcaccggcactcgccctgcggcgccagcgattgctgagcaggaaccttctgat
gctgaaaccgcaaacgttgctgatagcgaagataatcagaatgacaacgcccgtgaaaat
ggcatgccacgtcgttcacgtcgttctccacgccatctgcgtgtaagcggccaacgtcgt
cgtcgttatcgtgatgagcgttatccgacccagtcaccaatgccacttgcaggtgcgttc
gtttctccggaaatggcttcgggtaaagtctgggtcacttatccggttgctcagtcctct
gaacaacaggttactgaaacagaaactcctgaagtgctgactgagcaggtcgagattgca
caggcgaatacaccggtcatatctgacatcactgaagttacgcaacagccagtcgcagag
cctgtcaatgatgttgttgacgctgcaccacaagaggtgccggccgaaatcgcagcagca
gacgttgcacaacctgtagccgacgagccagtgctggtcgaaccggcaacagctgaacct
gttgcagaaacacctgtggttgatgttgcgccagaagcgctcgagcctgcgatcgttgaa
cccacagatgttctcgctgcatctgaagttcaggcacctgcgccagtcgccgaacccgaa
gtgaaagctgaacctgttgctgaagttaaacctgctgtggaaactgcgccagtcgcagcc
gctccggcaggtactgaagctgcggttgttgcacctcgcttcaagcacctcgcaaccgcg
ccaatgacgaaggcgccagcacctgcctatgtgccagagccacctcgtcacagtgactgg
attcgccctgagttcaactttgagggtaagggctctgcaggcggccatgcggcagccacc
actgcaacagccccggccaccaaacctgagatgccagccgagtaa
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