Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_0858
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Entry
RA0C_0858 CDS
T02107
Name
(GenBank) DNA polymerase iii, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03030
DNA replication
rai03430
Mismatch repair
rai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA0C_0858
03430 Mismatch repair
RA0C_0858
03440 Homologous recombination
RA0C_0858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rai03032
]
RA0C_0858
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_0858
Enzymes [BR:
rai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RA0C_0858
DNA replication proteins [BR:
rai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RA0C_0858
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RA0C_0858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DNApol_Exo
Motif
Other DBs
NCBI-ProteinID:
AFD55797
UniProt:
E4T9V6
LinkDB
All DBs
Position
complement(832379..837031)
Genome browser
AA seq
1550 aa
AA seq
DB search
MYLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQDYIIKPEGYDIPF
NATRIHGISTKMAHEQGRDLVEILEEFKEVLKKTKIVAGHNIEFDYNIVGAEFYRKSIEN
VLEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYEKLYGEKFDEAHNAAADVNATAQ
VFFEMMRVGIIPAETLKISEEQLKVYQENHPSPIRPFAIVIRRQVEDFNKKKKRTDFGDI
SEIELGDYFNFHNHSIFSSLQSTTSIGDLIDKAKSNQFPAVGMVDLGNMMGAFKFVSDVE
KYNSGVKKAHQEYLANKQKAEEEGADFNENAPESKELMAVLGCEFYISDRPEQKQFTKDD
PDRRTNVVLLAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQYKDDVIAVTSGIYG
DIPDAILNFGEQKGEERFKWWKETFGEDFYVQLQNHGLQEEEHLNEVLLDFADRYNVKIL
AQNETFYTDKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFR
QYPDAFEAYTELLSKFEPYTLKRDVLLPKFDIPEEFQSEEDLKDGGKRGENAYLRHLTYE
GAKKRYDEITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGS
AVAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKSNVA
QIITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIAKALSKYDKLKDEDKVL
VDEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAAKDAD
ILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAKTYQL
FKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGVEEI
IYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPK
FIEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEYMASV
MSNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIGEGPS
EAISQERAKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDIDNSGK
TNIEKLIRYGQSFQESKNEVENSLFADFAEEIQIEQPKIAPAMEWQNMHKLNKEKEIIGF
YLSAHPLDEYKYQFRFIQGELSKKEVLSQKDEILEELQSIPKESVLIEDTEDEPDLAVDL
DLVEGEDGEIIEEEVKNVEPKGSFNFLNLDEVEAFKDSIASGINPNLFSEKEAWKELRKI
NDAAKEYTVAGLITEYTIRDGKNSGEKIAFLTLEDYSGSYGFRLGDRDYMRLREKLALQR
FVIIKIKMVISKDGRVFVNINEVIDLKDAFEKYAKSLSIVADITDIRRADIEFFQNDLLS
HQGEHKLSFYLKNPNDETKLELPSIQRKINISAELLYKIQEYNKYQIFLN
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgtatcttatttttgacacggaaactacgggattgccaaagaattttaatgctccatta
tcagattcggataactggccgagaatggtgcagattgcttggcagttgcacgatgaagag
ggtaatttagtggaaaatcaagattatatcatcaagcccgagggttatgatattccgttc
aatgctactaggatacatgggatttctactaaaatggctcacgagcagggacgagatttg
gtggaaattttagaagaatttaaagaggttcttaaaaaaacaaaaatagtcgctggacac
aatattgagtttgattataatattgtgggggcggaattttatagaaagtccatagaaaat
gtgttagaaaaaattccgtctgccgatactatggcacttgggacagactactgtcagctt
ggaggaggtaggaatggaaagtataaaccgcctaaattggaagaactttacgaaaaactc
tatggtgaaaaatttgatgaagctcacaatgctgctgccgatgtaaatgccacggcgcaa
gtcttttttgaaatgatgcgtgttgggattattcctgcggaaacgcttaaaatttcggaa
gagcagcttaaggtttatcaagaaaaccacccgagtcctattcgtccgtttgcgattgtt
atcaggaggcaagtagaggattttaataaaaagaaaaaaagaaccgattttggcgatatt
agtgagattgaactcggtgattatttcaattttcataatcatagtatcttttcatcttta
cagtctaccacttccataggagatttgattgataaggctaaaagtaatcagtttcctgct
gttggtatggtggatttgggtaatatgatgggggctttcaaattcgtttctgatgtagaa
aaatacaattctggtgttaaaaaagcccatcaagaatatttagctaataaacaaaaagcg
gaagaagagggtgcagatttcaatgaaaatgctccagaatctaaagaacttatggcagta
ttgggctgcgaattctatatttctgaccgtccagagcaaaaacaatttactaaagacgac
cctgacagaagaactaatgttgtgcttctcgctaaaaacttcaatggttataaaaactta
gcgaagctgtccagtttaggatatgttaatggtttttattttggtgtacctagggtgtct
agggaaatggtggcacagtataaagacgatgttattgcggtaacatcgggtatttatgga
gatattccagatgctattttaaatttcggagagcaaaaaggagaagaacgatttaagtgg
tggaaggaaactttcggtgaggatttttatgttcagcttcaaaatcacggtttgcaagaa
gaggagcatttgaatgaagttttgttagattttgcggatagatacaatgtgaaaatttta
gcccaaaatgaaactttttataccgataaatctgatgctaacattcaagatattgtaagt
tgtatcaaagatggcgaaaagctgtccacaccagtaggaaaaggctttggcaagagaaaa
ggattgaggtctcaagagttttatatcaaagatgcggaggaactcaagcagtgctttagg
cagtatccagacgcttttgaggcttatacagagctgttgtcaaaatttgaaccttatact
ctaaagagagatgtcttattgcctaaatttgatattccagaagagtttcaatctgaggaa
gatttgaaagacggtggcaaaagaggagaaaatgcatacctgcgacatcttacttatgaa
ggagcgaagaagcgttatgatgaaattacggatgatataagagaaaggttagactttgag
ctagaaattattgctaatacaggctacccaggatatttcttgattgttcaagatttttgt
aacgaagctagaaagatgggggtatgggtaggtcctggtaggggttcggcggcaggttcg
gcggtggcttattgtattgggattaccaatgtagaccctataaaatatgacctccttttt
gagcgttttttaaatcctgaaagaatttcaatgcccgatattgatattgattttgatgat
gaaggacgggacagaatcattaaatgggttattgataaatacggtaaatctaatgtagca
cagattattacttactccgttttgggaggtaaatcggcgattaaagatgcgggtagggtg
ctagatgtgcctattccagaaaccaataatattgcgaaacttgtaccttctgtcccagga
atgaacattgctaaggctttgtctaaatacgataaacttaaagatgaagataaagttttg
gttgatgaaatgaaagcagttttagataatcctaacgaccagcgtttccctgtgttggat
tcggcaaaaaaaatggaaggttgtattagaaatacgggaatccatgcctgtggggtgatt
attacacctgaagatatttctaatttggtgcctatctcgatagcggctaaagatgccgat
attttggtctctcagtttgataactcggtggcagaaagtgcggggcttttaaaaatggac
tttttagggttgaggactttaaccattattaaagatgcgcttaaactcgtaaaagaaagg
cacggtatagacatcaatccagatgaaatttctttagatgatgctaagacttatcaactt
tttaaagagggaagaaccatagggattttccaatacgaaagtcctggtatgcaaaaatat
atgagggaattaaagcctaccgtttttgcggatttaattgcgatgaatgccttgtatcgt
ccaggtccaattaagtatattcctaactttatcaatcgtaaacacggggttgaagaaatt
atttacgacctcccagagaccgaagaataccttaaagaaacttacggaattactgtttat
caggagcaggtaatgcttttgtctcaaaaattggcaaactttactaaaggtgaagcagat
acattgaggaaggctatggggaaaaagcagatagatgttcttaataagatgtatcctaaa
tttatagaaggtggtaaaaagaataatctagacgaagaaaaacttaataaaatctggaac
gattggaaggcgtttgcggaatatgcatttaacaaatctcactctacttgttatgcactt
attgcttatcaaacggcgtttttaaaggcaaattatccagccgagtatatggcgagtgtg
atgagtaataacattaacaacacggcacaaatcacaatgtttatggaggattgtagagct
atgggcgtagatgttttaggaccagatgttaatgaaagtcagtataagttttcggtgaat
gataaagggcagataaggtttggtttaggagcgataaagggaattggtgaaggtcctagt
gaagcgattagccaagaaagagcgaaaggaaaatttaaaaatatctatgacttctttgaa
agagtaacaccgtcacaagtgaataaaagagtggtggagagtttggtaatggcaggagcg
tttgatgaggtagatacttaccatagagcacaatattttgatattgataattctggcaaa
accaatatagagaagcttattagatacggacaaagtttccaagaaagcaaaaatgaggtg
gaaaactctctttttgcagatttcgcagaggaaatacaaatagaacagcctaaaatagca
ccagctatggagtggcaaaatatgcataaactcaataaggagaaagaaattattgggttc
tatctatcggctcatcctttagatgagtataaatatcagtttcgctttatacaaggtgag
ttgagtaaaaaagaggttttatctcaaaaagatgaaatcttagaagagttgcaatctatc
ccgaaagaatctgttttaatagaagatacagaagatgagccagatttagcggtagattta
gatttggtagaaggtgaagatggcgaaataatagaggaggaagttaaaaatgtagaacct
aaaggcagttttaattttttaaatttagatgaagtggaagcctttaaagacagtattgcg
agtggtatcaatcctaatttattctctgagaaagaggcttggaaagagttaaggaaaatt
aatgatgctgctaaagaatataccgtggcagggctaattacagaatataccataagagat
ggtaaaaatagtggcgagaaaattgcatttttaactttggaagattatagtgggtcgtat
ggtttccgtttaggcgatagagattatatgcgtcttagggaaaaattggctttacaaagg
tttgtgattattaagataaaaatggtaatttccaaagacggtagggtttttgtgaatata
aatgaagtgatagaccttaaggacgcttttgaaaaatatgcaaaatcactatccattgtg
gcggatattactgatattagaagagcagatattgaattcttccaaaacgatttactctct
catcaaggagaacataagttaagtttttatcttaaaaaccctaatgatgaaacgaagcta
gagctaccgtcaatacagaggaaaatcaatataagtgcggagcttttgtataaaattcag
gagtataataagtatcagatatttcttaactag
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