Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_0860
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Entry
RA0C_0860 CDS
T02107
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA0C_0860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rai03019
]
RA0C_0860
03016 Transfer RNA biogenesis [BR:
rai03016
]
RA0C_0860
Enzymes [BR:
rai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RA0C_0860
Messenger RNA biogenesis [BR:
rai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RA0C_0860
Transfer RNA biogenesis [BR:
rai03016
]
Prokaryotic type
tRNA degradation factors
RA0C_0860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_2
KH_SLS1_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AFD55799
UniProt:
E4T9V8
LinkDB
All DBs
Position
837691..839826
Genome browser
AA seq
711 aa
AA seq
DB search
MNAPQAITETILLKDGREITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFL
PLTVDYREKFGAAGRIPGNFFRREAKPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMISL
ISYDEKVMPDSLAGLAASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSWETLQSGVELD
IMVGATKDSIVMVEGEMDEITEQEMLEAITFAHQEIKTQVEAQERLAQKVGKAFPKREYC
HETHDEELKKQIWDYAYQKYYDIAKNPSAKEERGEKFSAVVEEFLAQYTEEELEEKADLA
KVYFHDVQKEAVRQLILNENIRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTT
VTLGSLMDANRIDSVITQHDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKV
MIPEETPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIPMRKPVSGIAMGLITDKESG
KWTVLSDILGDEDHLGDMDFKVTGTENGITACQMDIKIQGLTMDIMEQALMQAKNGRLHI
LGEMLKTISEPRADVKPHAPKMVMMEIPKDFIGAVIGPGGKVIQQMQKETGTVITIEEKG
EIGYIEISGTDREKINAAIAQINEITFIPIVGEVYQGKVVKVMDFGAFVQLAKGTEGLLH
ISEIDWKRTDKVPYKEGDIVEVKFMGYDDRKKMKLSRKVLLPKPPREEKSK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaccacaagcaatcaccgaaaccattctgctgaaagacggcagagaaatcact
attgaaacaggtaaattagctaaacaagctgatggagccgtagttgtaaaaatgggaggc
actatgctactagcgacggtagtagccgctaaggaagctaatcctggcgtagatttcttg
cctcttactgtagattacagagaaaaatttggagcagcaggaagaatccctggtaacttt
ttcagaagagaagctaaaccttctgatgatgaagttcttacaatgcgtctagtggacaga
gttatcagaccattattccctagcgatttccatgcggaggttcaagtaatgatttctctt
atctcttacgacgaaaaagtaatgccagactcattagctggtcttgctgcatcagccgct
attgcgattacagatattcctttcaacggaccattttcggaagttagagtcatcaaaaaa
gacggcgttcttagcatcaatcctagctgggaaactttacaaagtggcgtggaactagat
attatggtaggagctactaaagactctatcgtaatggtagaaggtgagatggacgaaatt
accgagcaggaaatgctagaagctattacttttgctcatcaagaaattaaaacacaagta
gaagctcaagaaagattggctcaaaaagtgggcaaagccttcccaaaaagagaatattgc
cacgaaacccacgatgaagaattaaaaaaacaaatctgggattacgcttaccaaaagtat
tacgacattgctaaaaaccctagtgcaaaagaagaaagaggagagaaattctccgcagta
gtagaggaatttttagcacaatatacagaagaagaattagaagaaaaagcagatttagct
aaagtttacttccacgatgtacaaaaagaagctgtacgccaacttatcttaaacgagaac
atacgtttagatggaagaaacaaccaacaaattcgtcctatttggagtgaagtagattat
cttcctgccgcacacggttcttctgtatttactagaggcgaaactcaatcgcttactacg
gttactttaggctctcttatggacgctaacagaattgacagcgttatcactcaacacgac
gaaagattttatctacactataacttcccaccattttcaacaggtgaagctagaccactt
agaggtacttccagaagagaagttggacacggtaacttagctcaaagagctttaaaagtg
atgattccggaagaaacaccatatactattcgtattgtttcagacattttagaatctaat
ggttcgtcttctatggctacggtatgtgctggtacactagctcttatggacgcaggtatc
ccgatgagaaaacctgtttctggtatcgctatgggacttattaccgataaagagtctgga
aaatggacggtattatctgacatcttaggcgacgaagaccatctaggagatatggacttt
aaagtaactggtacagaaaacggtattactgcttgccaaatggacattaaaatccaaggg
cttacgatggatattatggagcaagctctaatgcaagctaaaaacggaagacttcatatc
cttggagaaatgcttaaaacaatttctgaacctagagcagatgttaaacctcacgcacct
aagatggtaatgatggaaatccctaaagacttcattggtgctgtaataggacctggtggt
aaggtaatccagcagatgcaaaaagaaacaggcactgtaattaccatagaggaaaagggt
gaaataggctacatagaaatatctggaactgatagagaaaagataaatgcagctatcgct
caaatcaacgaaatcactttcattccaatagttggagaagtttaccagggtaaagtagta
aaagtgatggattttggtgctttcgttcagctagctaaaggtacagagggacttttacac
atttcggagattgattggaagagaaccgacaaagtaccttacaaagaaggagatattgta
gaagtgaaatttatgggatacgatgaccgtaagaaaatgaaactttctagaaaagtactc
ctcccaaaacctccaagagaagagaaatctaaataa
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