Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_0864
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Entry
RA0C_0864 CDS
T02107
Name
(GenBank) ATP-dependent DNA helicase recq
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA0C_0864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rai03019
]
RA0C_0864
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_0864
Enzymes [BR:
rai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA0C_0864
Messenger RNA biogenesis [BR:
rai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RA0C_0864
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RA0C_0864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
zf-CXXC
PT26-6P_helical
QueC
Motif
Other DBs
NCBI-ProteinID:
AFD55803
UniProt:
E4T9W1
LinkDB
All DBs
Position
842108..844012
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AA seq
634 aa
AA seq
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MPLLPEHITKLLYDTLAHFWGYQEFREPQEEIISSIIMGQDTFALLPTGGGKSLCYQLPA
LVLEGTCIVVSPLLALMKDQVYQLKSKGIEAEYLSSELDEAQAEQIYSLCIEGTTKILFV
SPERLTNSLFLQKIEEIKVSFLAVDEAHCISEWGQDFRPSYQNIHKFRKDRLKDLPVLAL
TATATPKVLEDIKSKLNLKTPQIFQKSFERTNIKIHTEECSDKYSRILNLVKNHPYSGII
YASTRKETQQLTEFLQHNGIPNVDFYHAGLPLKEKHQKQNQWLHSNNGVLVATNAFGMGI
DKDDVRYVIHLSPPSSVENYYQEIGRGGRDGESALAYLLWNKYELSNSDETLKQQIPNKE
SFKKAISYLYSLFQIADFELPEQTFQFDIRQWQRVTKMPLASLKNILSFLHNQEIIYYNN
LKSKSSIELNIEVEDFESLAPQDAYFIEILLRHLSGFSHHKVSFREEHLAHKINTNSTEL
KKRLLELANKGYINYIDGALASIKFLIPRDNASFGGKWWHLFLEIQKNKVQKWEEMKFFI
QSEKYCKMKMILSYFGEKKAQNCGQCSVCLSRKTSLSSAHNPILKVLAVEPCTLEDLSAQ
IPHLSREKLLEQVILLLDTDKIKMLNYKTYTINS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcctacccgaacatatcactaaactactctatgatacacttgcccatttttgg
ggctaccaagagtttagagaaccgcaggaagaaattatcagctctatcattatggggcaa
gatacttttgctctcttacccacaggaggtggaaaatctttgtgctatcagctccctgca
ttagttttagaaggtacttgcattgtggtttctcctcttttggctttgatgaaagaccaa
gtgtatcaactaaaaagcaaaggcatagaagcagagtatctaagttcagaattagacgaa
gcccaagcagaacaaatctattcactttgtattgagggaactaccaaaatactatttgta
tctcccgaaaggcttaccaacagcctttttcttcaaaaaatagaagaaattaaagtttct
tttttagcggtggacgaagcccattgtatctccgagtggggacaagactttcgcccaagc
taccaaaatattcataagtttagaaaagaccgactgaaagatttgcccgttttagctctt
acggctacggctactccgaaggtattggaggatattaaatctaaactcaatctgaaaaca
ccacagatatttcaaaagagttttgaacggacgaatattaaaatacacacagaagaatgt
tccgacaagtattctagaattttaaacttggtaaaaaaccacccttattcgggaattata
tacgcttctacgagaaaggaaactcaacaactcaccgagttcttgcaacacaacggaatt
cctaatgttgatttttaccacgcaggactgccacttaaagaaaaacaccaaaaacagaat
cagtggctacattctaacaatggagttctagtggctaccaatgcttttggtatgggtata
gacaaagatgatgtacgatatgtgatacacctctctccgcctagttcggtagaaaactat
taccaagaaattgggagaggaggtagagatggtgaatctgccctcgcttatttgttatgg
aacaagtatgaactttctaattctgacgaaactcttaaacaacaaattcctaacaaagag
agttttaaaaaggctatatcttatctctattctttatttcagatagctgattttgaactt
cctgaacagacttttcaatttgatattagacaatggcaacgggttaccaaaatgccttta
gcctcgcttaaaaatattttgagtttcctacataatcaagaaatcatctattataataac
cttaaatctaaatctagcatagagctaaacatagaggtagaagactttgaaagtctagct
ccacaagatgcctattttatagaaatattgttaagacatctatctggattttcgcatcat
aaagttagctttagagaagaacatttagctcataaaatcaacaccaactctaccgaacta
aaaaaacgactcctagaacttgccaataaaggctatattaactatatagatggggcttta
gctagtattaaatttcttattcctagagataatgcaagttttggtggtaaatggtggcat
ctttttctagaaatacaaaaaaacaaagttcagaaatgggaagaaatgaagttttttatt
caatccgaaaagtattgcaaaatgaaaatgatattatcttatttcggagagaaaaaggct
caaaattgcggacaatgctcggtttgtttgtctcgtaaaacttcgctgtcttccgcccat
aaccctatacttaaagttttagcagtagaaccttgtactttagaagacctctcagcacag
ataccacatctatcgagagaaaagctattagaacaagtgattcttctgctagataccgat
aaaattaaaatgcttaactataaaacttatacaataaactcatga
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