Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_1114
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Entry
RA0C_1114 CDS
T02107
Name
(GenBank) exonuclease recj
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03410
Base excision repair
rai03430
Mismatch repair
rai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RA0C_1114
03430 Mismatch repair
RA0C_1114
03440 Homologous recombination
RA0C_1114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_1114
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RA0C_1114
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RA0C_1114
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RA0C_1114
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
ArnB_C
Motif
Other DBs
NCBI-ProteinID:
AFD56029
UniProt:
E4TBY0
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Position
1119300..1121042
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AA seq
580 aa
AA seq
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MFALFSLLLWSMNQKWIYKPEPSEEVVDALISSIGYGTLESKILVLREIDNYQKAREFFK
PNLEDIHNPFLMADMQNAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKK
YLDFYIPDRNTEGYGISKEGIDFAKENGFSLIIALDCGIKAIDKIDYAKELGIDFIICDH
HLPGENIPKAVAVLDPKRTDCRYPFKELSGCGVGFKLCQGLNNIYRIPDEELYELTDLLA
ISIAADIVSMTGENRVLAKLGLKTLRKTRNLGIRLLIPKEKLATFDISNIVFEIAPKINA
AGRISHGKAAVELMVSDNLKHATQIVENILNLNDHRREMDMSSTTAALQQVIDTQQIQNA
TTVVYGSDWNKGVIGIVASRLTETYYKPTVVFTDGNNGEIVASARSVSDFDVHAALEECS
DLFLKFGGHPAAAGLSMEKEKFELFKEKFEKTVAKNIKEHQKEPSITIDTVVDIDDLNKD
FYNFHRKLAPFGPHNMKPILVLKNLNISGHVKQMGKDNSHIKFYIQNPNNKRNIECVGFK
LGHFADEFRNKTFDLAFTVEENHWKGNVTYYLNIKGVKFS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcccttttttcgttacttttgtggtctatgaatcaaaaatggatttacaaacca
gaacctagcgaggaagtagtagatgcccttatttcatctataggctatggcacactagag
tctaaaatactcgtcctccgcgagatagataattatcagaaagcaagagaattctttaaa
cccaaccttgaagatatacacaacccattcttaatggcagatatgcaaaacgccgtagaa
cgcattgctaccgctatagagaacggagaaaaaatattagtctatggagattatgatgta
gatggcaccactgccgtagcactaatgtacctataccttagtaaaattgtagagaagaaa
tatctagatttttacattcctgaccgaaatacagaaggctatggtatttccaaagaaggg
atagatttcgctaaagaaaacggcttttcgctaattattgctttagattgtggcataaaa
gctattgataagatagattacgctaaagagttagggatagactttattatatgcgaccac
cacttaccaggggaaaacattcctaaagcagtagccgtactagaccccaaaagaaccgat
tgccgttatcctttcaaggaactttcaggctgcggtgtagggtttaaactatgccaagga
ctcaataatatttatagaatacccgatgaggagctgtacgaacttacagatttgttagcc
atttctatcgcggcggatatcgtctctatgacgggcgaaaaccgtgtactcgcaaagtta
ggacttaaaaccttgagaaaaactagaaatctaggtataaggcttttaatcccaaaagaa
aaactagcgacttttgatatttctaatatcgtgtttgaaatcgcaccaaaaataaatgcc
gcaggaagaatttcacacggtaaagctgctgtggaactcatggtttcagataacttaaag
cacgccacacagattgtagaaaacatactaaacctcaacgaccacaggagagaaatggat
atgagttctaccaccgctgcactccagcaggtaatagacacccaacaaattcaaaacgcc
accaccgtagtttatggctccgattggaacaaaggcgttataggaattgtagcctcgagg
cttaccgaaacttattataaacctaccgttgtatttaccgatggtaataatggagagatt
gtagcttcggcaaggtcggtatcagattttgatgttcatgccgctttggaagagtgttcg
gatttatttctaaaattcggaggacaccctgctgctgctgggctttctatggaaaaagaa
aaatttgaactctttaaagaaaagtttgaaaaaacagttgcaaagaatatcaaagaacat
caaaaagaacctagtatcactattgataccgtagtagatatagacgacttaaataaggat
ttctataattttcatagaaaactagctccgtttggccctcataatatgaaacctatttta
gtccttaaaaatcttaatatcagcgggcatgtaaagcaaatgggtaaggataacagccac
attaagttttacattcaaaacccaaacaacaagcggaatatagaatgcgtaggatttaaa
ctaggtcatttcgcagacgagttccgcaataaaacctttgatttagcctttaccgtagaa
gaaaaccactggaaaggtaatgtaacttattacctcaacatcaaaggcgttaaattctct
taa
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