Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_1593
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Entry
RA0C_1593 CDS
T02107
Name
(GenBank) DNA polymerase iii, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03030
DNA replication
rai03430
Mismatch repair
rai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA0C_1593
03430 Mismatch repair
RA0C_1593
03440 Homologous recombination
RA0C_1593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rai03032
]
RA0C_1593
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_1593
Enzymes [BR:
rai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RA0C_1593
DNA replication proteins [BR:
rai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RA0C_1593
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RA0C_1593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AFD56480
UniProt:
E4TCG5
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All DBs
Position
1608377..1609600
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AA seq
407 aa
AA seq
DB search
MYSVIDIESNGGAFREECIIEVAIYRYDGHKIVDQFISMVNPEADISHFVQKLTGITPKM
VKTAPKFHEIAKRIIEITEGSTLVGHNVDFDYRMLRQSFKRLGYHFSIETLDTIPLAKKL
IPNEESYSLGKLVKSLGIPLAEHHRASSDARATLDLFKLLMTKDKDNEIIQSHFEEANAK
TYFNKIKALTQDLPAERGIVYFQDARGKVILSEVTDGIYKFAKKVFNAKSKKWQKIQNEV
EQISYELVASELFAKLIMNTKGLAKTTHLPYGLFFENDEWLVKRVRRDMPLLPMIKFKTH
SQGRKVLNFIKNHEVLNNKEALEQFLSFKDKNILFTGQGRTRGEKSFLLIEKGQVSGYGF
YDWYHQISTYDKLSKLKIKVDRVSSDLKNEIKLALLRNEFKIQEIPS
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtattcggtaatagacatagagagtaatggtggtgcattccgagaggagtgcattata
gaggtcgctatctatcgttatgatgggcataagatagtagaccaatttatctctatggta
aatccagaagccgatatttctcatttcgttcaaaaactgacaggcatcacgcctaaaatg
gttaaaacagctcccaagttccacgaaattgccaaaagaattattgaaattacggaagga
agcaccttagtagggcataatgtagattttgattatagaatgttaaggcagtcttttaag
agattgggttatcatttcagtatagaaacattagacactatacctttagccaaaaaactt
attcctaatgaagaaagttattctttggggaaattggtaaaatctttaggaatacctttg
gcagaacatcatagagcaagtagtgatgctagagcaacgctagacctttttaaactgcta
atgactaaggataaagataacgagattatccaatcccactttgaggaagctaatgcaaaa
acttacttcaataaaattaaagctcttacgcaagatttaccagcagaacgagggattgtt
tatttccaagatgctagaggaaaggttattttatccgaggttacagatggtatttataag
tttgcgaagaaggtatttaatgccaaatctaaaaagtggcaaaaaatacaaaatgaagta
gaacagatttcttatgaactagtggcgtcagagttgtttgcaaagctgattatgaatact
aaaggtcttgccaaaacgacacatttgccgtatggacttttttttgaaaatgatgaatgg
cttgtcaaaagagtgcgtagagatatgccgttattgcctatgattaaatttaaaacccat
tcgcaggggagaaaagtgcttaattttattaaaaatcacgaagttttaaataacaaagaa
gctcttgaacagtttttaagttttaaagataaaaatatcctttttacaggacagggcagg
acgagaggcgaaaaatcgtttttgttgatagaaaaaggacaagtgtcgggttatggattt
tacgattggtatcaccagataagcacttacgataaactttcgaagttaaaaataaaagta
gatagagtttcttctgatttgaaaaacgaaataaagttagccttgctcagaaatgagttt
aaaatacaggagattcctagctaa
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