Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_1806
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Entry
RA0C_1806 CDS
T02107
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RA0C_1806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rai03021
]
RA0C_1806
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_1806
Enzymes [BR:
rai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RA0C_1806
Transcription machinery [BR:
rai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RA0C_1806
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RA0C_1806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AFD56687
UniProt:
E4TD18
LinkDB
All DBs
Position
1815556..1819824
Genome browser
AA seq
1422 aa
AA seq
DB search
MSNKNKTSRFNKISIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQQGIAKKLDGSDFEEMEFLTEEEYLDILDTLPAENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSYDLRHKAHNETSKQRRTEALKRLSVVEALRDA
NTRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPTLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTEDYKVK
GEGLTFYSPEEAEIAYNEGQVTLNAKVKCKLPVKNENGELVTKLIETTVGRILFNQIVPE
QIGFINELLTKKSLRNVIGRILAETDFPTTVQFLDRMKDLGYSNAFKGGLSFSLADIVVP
EEKKQMIASAVESVDDIKANYNMGLITDTERYNQVIDVWTNTNANLTEMIMQRMKTDQGG
FNSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGVEVTPLKKNDEIV
EKLSERILGRISLHDIYDPETDELIVEADVLIDEELAKKIEEAGIESVEVRSPLTCESKR
GICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVA
KRDGIVEMDEIRTVTSEDEEGNQAEIVVSRSTEFRLVADNANRTPIMVANLPYGSILSVK
PGDKVKKGDLIARWDPYNAVIIAETSGKVEYEDIIKGVSFQLEIDEQTGFEEKVISESRN
KKAVPTLRVVDSKGVEQKSYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLP
RVTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVESKSGEIKKYLVKLSNQILVQE
NDFVRAGSPLSDGSVTPNDILAIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQM
MTKVEIVDGGDTQFLEGSLEHKQDFIEENERVFGMKVVTDPGDSQVLKAGQMITARELRD
ENSKLKREDLKLVEVREALTATAHPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSG
KVDELNGLKENVIVGHRIPAGTGLKDYQNFIVGSNKEFEDLN
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtagatttaataaaatctcgataggtttagcttcacca
gagtctattttacaagattcaagaggggaagtattaaaaccagaaaccattaactataga
acgcacaaacctgaaagagacgggcttttctgtgagaaaatattcggtcctgtaaaggat
tacgagtgtgcttgtggaaaatataagcgtatccgttataaaggcattgtctgcgaccga
tgcggtgtagaagtaacggagaaaaaagtgcgtagagagcgtataggacacatcaatttg
gtagttcctgtagctcatatttggtacttccgttcgttaccaaacaagataggttatctt
ttaggattaccatctaagaagttagatatgattatctactacgaaagatatgtggtaatt
cagcaaggtatcgctaaaaaattagatggttctgatttcgaggaaatggaattcttaacc
gaggaagaatatctagatattttagatacacttcctgcggaaaatcaatacttagatgac
tctgaccctaataagtttatcgctaaaatgggagcagaggctgtggaagaattattaaag
agaatagatttagatgctctttcttatgatttaagacacaaagctcacaacgaaacatct
aagcaaagaagaacagaagcacttaaaaggttatcagtagtagaagcacttagagatgct
aacacgagaatgattaatcgtccagagtggatggtgatgcgtgtgcttcctgtaatacca
ccagagttaagaccattagtgccactagatggtggacgttttgcgacatcagaccttaac
gacctttacagaagagtaattatcagaaacaaccgtcttaagagacttctagaaattaaa
gctcctgaggttatcttaagaaacgagaagcgtatgcttcaagaagcggtagattcttta
tttgataatacaagaaaatcttctgcggttaaatctgagtctaacagaccattaaaatct
ctttctgattcattaaaaggtaagcaagggcgtttccgtcaaaacttacttggtaaaagg
gttgactactctgctcgttcggtaattgtggtaggtcctaccttacaactacacgagtgt
ggtatccctaaagatatggcggcagagctttataagccgttcatcatcagaaaactaatc
gagagaggtatcgtaaaaacggtaaaatctgcgaagagaattatagatagaaaagaacct
gtggtgtatgacattctagaaaatgtaatgaaaggtcacccagtacttcttaaccgtgca
cctacgcttcaccgtttaggtattcaggcattccaacctaaaatgattgaaggtaaagcg
atacaactacatccattggtaactacggcattcaacgccgactttgatggtgaccagatg
gcggtgcacttacctttaggtccagaagctattttagaggctcaacttttaatgttaggt
tctcagaatatcttgaaccctgctaacggttctccaattacggtaccatcacaggacatg
gtacttgggctttactttatgactaaagaagctcactctacggaggattataaagtgaag
ggagaaggtttaactttctattctccagaggaagcagaaattgcctataatgaaggacaa
gtaacgcttaatgctaaagttaagtgtaaacttcctgtaaaaaatgaaaacggagaatta
gtaactaaactgattgaaactactgttggtagaattttattcaatcagatagtacctgaa
caaataggattcatcaatgaacttttaacgaagaaatcattaagaaatgtaattggtaga
atcttagcagaaactgatttcccaactacagttcagttcttggatagaatgaaagattta
ggatactctaacgcattcaaaggaggtctatcgttcagcttagctgatattgtggtgcca
gaagagaagaaacaaatgatagcttcggcggtagaaagtgtagatgatattaaggctaac
tataacatgggtcttatcactgatactgagcgttataaccaagtgattgatgtttggaca
aatactaacgctaaccttaccgaaatgattatgcagagaatgaagaccgaccaaggtggt
tttaactctgtatatatgatgctagattctggtgcgaggggttctaaagagcagattcgt
cagttatcaggtatgcgtggtctaatggcaaaacctcaaaaagcaggttcggtaggtgca
gagattatcgaaaaccctattgtggctaactttaaagagggtctttctatccttgaatac
tttatctctactcacggtgctcgtaaaggtcttgcggatacggctcttaaaacggcggat
gctggttacttaacgagaagattggtagatgtagctcaagacgttatcattactgaagac
gattgtggtacactaagaggtgtggaagtaacaccacttaaaaagaatgacgaaatagta
gagaaattatctgaaagaattttaggtagaatttctttacatgatatatatgacccagaa
acagacgagttaatcgtagaagctgatgttcttatagatgaagaattagctaagaagata
gaagaggctggtatagagtctgtggaggttcgttcacctttaacttgtgaatctaagaga
ggtatctgtgctaaatgttacggtagaaacttagcaacaggtaagatgattcatatggga
gaagctgtgggtgttattgcagcacagtctatcggggagccaggtacacagcttaccttg
agaaccttccaccaagggggaacagcgggtaacgtttccgaaaatccgtctatcgtagct
aagagagatggtattgtagaaatggacgaaattagaacggtaacttctgaagatgaagaa
ggtaaccaagctgaaatcgtggtgtctcgttctaccgaattccgtttggtagcagataat
gctaatagaacgcctattatggtggcgaacttaccttacggttcaatactttctgtaaag
ccaggggataaagtgaagaaaggagaccttatcgcaagatgggatccgtataacgcggta
atcattgccgaaacttctggtaaggtagagtatgaagatattatcaaaggagtgtctttc
caattagaaattgacgaacagacaggctttgaagaaaaggtaatctctgaatctagaaat
aaaaaagcggtacctactcttagagtggtagattctaaaggagtagagcaaaaatcttac
aacttacctgtgggagcacacttaatggtaaacgatggagagaagattaaagctggtaag
attttaattaaaatcccaagaaaatctgcaaaagcaggggatatcacgggaggtcttcct
agagtaacggaacttttcgaagctagaaatccttctaatcctgcggtagtaaccgaaatt
gacggggtagtatcttacggaaaaatcaagagaggtaaccgtgagcttatcgtagagtct
aaatctggagaaattaagaaatacttggtgaagttatctaaccaaatcttagttcaagaa
aatgacttcgtaagagcagggtctccattgtcagatggttctgtaacgcctaatgatatt
ttagcaattaaaggtcctacagcggtacaagaatatctggtaaacgaaatccaagaggta
taccgtttacaaggggtgaagattgatgacaagcactttgaaatcatcgttcgccaaatg
atgacgaaagtagaaattgtagatggtggagatactcagttcttagaaggtagtctagaa
cataagcaagactttatcgaagagaacgaaagggtgtttggcatgaaggtggttaccgac
ccaggagactctcaagtgcttaaagcaggtcagatgataacagcgagagagctaagagat
gaaaactctaagcttaagagagaagacttaaagctggtagaagttcgtgaagcacttaca
gctacagcgcacccagttttacaaggtatcacaagagcggctctacaaactaagtcattt
atgtctgcggcatctttccaagaaactactaaggtacttaacgaagcagcggtatcaggt
aaagtagatgagctgaatggtcttaaagaaaatgtaattgtagggcacagaattcctgca
ggaacaggtcttaaagattatcagaactttatcgtaggttctaacaaagaatttgaagac
ttaaactaa
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