Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_1949
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Entry
RA0C_1949 CDS
T02107
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RA0C_1949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_1949
Enzymes [BR:
rai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA0C_1949
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RA0C_1949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AFD56820
UniProt:
E4TDF1
LinkDB
All DBs
Position
complement(1986146..1989505)
Genome browser
AA seq
1119 aa
AA seq
DB search
MILSPIHESLLPFLLKHQFGNSVLEALPHHQHISVKGMAGSSPSLICAELFLTQNQPILL
IVDDKEDAHYTTTELEELLGEDKVLYFPATHLEPYQTEKTQNANLVLRTEVLNQLNANPE
PKVIVAHYAALCEKVLKKEDFKAISHHIKVGYQLDFDFTGELLEQFNFHLTDFVSEPGEF
AVRGGIVDVFSYANDKPYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAVQGT
KVPFLDLLPKDSFIVTKNAYLGLNYIRDFYTKAEEKYTQLNPDIKHQKPNELFISDEVFF
KTYQKFRTVDFTSQSLQLPQAPFIELKQNPQPSFNKNFELLIEDLEEKQKQGFNLWISFS
SEKQKERLKSIFEDLGSAISFQFFKSELHQGFIDHQHKILVYTDHQIFDRYQRYRAKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNGGKTQECFKLTYKNGDLLYVSI
HALHKISKYNGAEGKEITLSKIGSPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAY
TPDTYLQNELEASFLYEDTPDQEKATLDVKRDMEADTIMDRLVCGDVGFGKTEVAIRAAF
KAATDGKQVAVLVPTTILAFQHYRSFAERLKDFPVNISYLNRFRTAKQKRETLEKLAEGK
IDIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLK
DIAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQEALEELQNDAEFESLFENEADRK
KLFKSSKDVNIDTDLELMLPDSYVSSTEERLSLYQKLAEINNKEELKRFEAELEDRFGSL
PEEAINLLKSVELKWLAAAIGFEKIVMKNGILLGYFPSNPQDKFYQTEKFKKIIQYLSQN
PQKASLKEKHSAEGNQLMMRKDHINDVDEVNELLQAILN
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgattttatccccaatccacgaaagccttttacctttcctcctaaaacatcaattcgga
aactccgttttggaagctttacctcatcatcagcatatttctgtaaagggaatggcgggt
tctagcccaagtttaatctgtgccgagctattcctcacccaaaaccaacctatcctcctt
atagtagatgataaggaagatgcccactacaccactacagaactggaagaactactcggc
gaagataaggtactctatttccctgccacccacctagagccttaccaaaccgaaaaaaca
caaaatgccaatttggtattaagaaccgaagtgcttaatcagctcaacgccaatccagag
ccaaaagttattgtagcccactacgctgccctttgtgaaaaggtgcttaaaaaggaagat
tttaaagccatttctcaccatattaaggtgggctaccagctagattttgattttacaggc
gaactattggagcagtttaattttcacttaaccgattttgtttccgaaccaggagagttt
gccgtaagaggcggtattgtagatgtattctcctatgccaatgataagccttatcgtatc
actttttttggcaacgaggtagaaagcatcaaaacttttgatattgaaactcaactatcc
ataagtaaggtagaaagtctgcaattggtttctaatatgaattttgcagtgcaaggcacc
aaagttccgttcctagacttactgccaaaagatagctttattgttactaaaaatgcctat
ctaggacttaactacatcagagatttttacacaaaagcagaggaaaaatatacccaactc
aaccccgacatcaaacatcaaaaacccaacgaactatttatatcagacgaggtatttttt
aaaacctatcaaaagtttagaacggtagattttacctcgcaatcgttacaacttcctcaa
gctccttttattgaactcaaacaaaacccacaaccgagttttaacaagaattttgaactc
ctcatagaagacctagaagaaaaacaaaagcaaggctttaatttatggatttcgttttcc
tccgaaaaacagaaagaacgactgaaaagtatttttgaagatttgggaagcgccatttct
tttcagtttttcaaatcggagctgcatcaagggtttatagaccaccagcacaaaatcctt
gtctatactgaccatcaaatttttgatagataccaacgctaccgagctaaaaacactttt
gccaagtctgaacaactcacacttaaagatttaatgtctttaaaagtaggcgactacatt
gcccatattgaccacggcatcgggaagtttatggggctggtaaaggtaaataatggtggt
aaaactcaagaatgttttaaattgacttacaagaacggagatttgctctatgtaagcata
cacgccctgcataaaatttctaaatataatggtgccgaaggtaaagaaattacactttcc
aaaataggctctccttcgtggaagaacctcaaaaataaaactaaagccaaggttaaacaa
attgcatttgaccttataaaactttacgctaaaaggaaaaccgccaaaggcttcgcctat
acaccagacacttacctccaaaatgaattagaggctagctttctctacgaagatactcca
gaccaagaaaaggcaacgctagatgttaaacgagatatggaagccgataccattatggat
agactcgtctgtggtgatgtgggatttggtaaaaccgaagtggctataagagccgccttt
aaagccgctacagatggtaaacaagttgctgttcttgtacctactaccattttagcgttt
cagcattaccgaagttttgcagaaaggcttaaagatttccctgttaatatttcatacctc
aatcgttttcgtacagcaaaacaaaaacgagaaaccctagagaaactcgccgaaggtaaa
attgacatcatcatcggtacccatcaacttgcctccgacaaagtcaagtttaaagattta
gggcttctcattatagacgaagaacataagtttggagtttctgtaaaagacaaacttaaa
actttaaaagccaatatagatactctcacgcttaccgctacgcctatccctagaacgcta
caattttcgctaatggcagcgagagatttatccgtaattaaaacacctccacccaacagg
caacctgtggaaactcaactcataggttttgatgaagaaattataagagatgccatttcc
tacgaattacaaagagatgggcaggtctatttcatcaataacagaattgataacttaaaa
gacattgcgggaatgatacaacgcctcgtccccgatgctagagtgattacaggacacgga
caaatggacggtaagcagctagaagaaaacatattagactttatggaaggaaggtatgat
gtactggtttctacaacgattgtagaaagtggtgtagatgtacccaatgctaatactatc
tttattaacgatgcccaaaggtttggtatggcagatgtccaccagatgcgtgggcgagta
ggaagaagcaaccgaaaagccttttgttaccttattacaccaccttttgatatggtaact
tctgatgctagaaaacgacttgaagctatagaacaattttccgatttaggcagtggtttc
caaatcgcaatgaaagaccttgaaattcgtggtgctggtgatttgctcggtgcggagcaa
agtggatttatcaacgaaatgggctttgaaacttatcaaaagataatgcaagaagcctta
gaagaactacaaaacgatgccgagtttgaaagcctttttgaaaacgaagcagaccgcaaa
aaactattcaaatcctctaaagatgttaatattgataccgatttggagctgatgcttcct
gactcttatgtaagtagtaccgaggaacgactaagcctctaccaaaaacttgcagaaata
aataacaaagaggaactaaagcgctttgaggcagaactagaagaccgttttgggtcattg
ccagaagaagccatcaacctactaaaatcagtagagttaaaatggttagccgcagctatt
ggttttgaaaaaattgtaatgaaaaatggtattttattgggttatttccctagcaatccg
caagacaaattttaccaaaccgaaaagtttaaaaagattatccagtatctaagccaaaat
cctcaaaaggcaagtcttaaagaaaaacattcggcagagggcaaccagcttatgatgaga
aaagaccatattaacgatgtagatgaagtgaatgaacttctgcaagctatactcaactaa
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