Raineyella fluvialis: Rai3103_10705
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Entry
Rai3103_10705 CDS
T06259
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rain
Raineyella fluvialis
Pathway
rain03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rain00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rai3103_10705 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rain03400
]
Rai3103_10705 (mfd)
Enzymes [BR:
rain01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rai3103_10705 (mfd)
DNA repair and recombination proteins [BR:
rain03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rai3103_10705 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGF24073
UniProt:
A0A5Q2FG21
LinkDB
All DBs
Position
2350753..2354589
Genome browser
AA seq
1278 aa
AA seq
DB search
MTEHVTGRLAGILDLLGTDPVVAECVSDARTGVLHSCDITAPGSVRAFLTAELVRRTERT
FLLVTATYREAEEQVAALQALLGHDVAAYYPAWETLPHERLSPRSDTVGRRLEVLRRLAG
NDPQPAPRVVIAPVRSLLQPQVAGLADIAPVRLRRGEDHDIDAIAEALVAAAYLPVDMVQ
RRGEFAVRGGIVDVFPPTHEHPVRIDFFGDTVEDLRYFMVADQRSTDRVLDEVICSPCRE
LLMTADVKARAEALIADHPELTEMLDRIAQGLGADGMESLAPALVDRMELLLDVLPSDTL
VLVADPELVRTRAADLVTTSEEFLQAGWAAAASGGTAPIDLRASSYQELGAVRAHALELG
QSWWTISPFAVGPDEDRDAAADALAHIQAGATPVRTIRARDAHSWAGDTERAVAEIAAAV
RDGWRVVMSAEGHGTTQRLAELLGEHDVAARVVEDVTEPPREHVVELVTTGVRHGFLADD
VRLAVWTAGDLSGQAQTDRAERKMPARRRKAIDPLELKPGDPVVHEHHGVGRYVEMMQRT
VAGATRDYMVIEYAPSKKGQPGDRVFVPMEQLDQVTRYVGGELPALDKMGGSDWAKRKSR
ARSAVKEIAGELVRLYAARQAAKGFAFSADSSMQRELEDAFDYTETPDQLSAIDEVKRDM
EQTVPMDRLICGDVGYGKTEIAVRAAFKAVMDSKQVAILVPTTLLVTQHYNTFAERYAGF
PVRVAALSRFQTDKQAREVLDDLAAGKVDVLVGTHRLLSKEVVFKDLGLVIIDEEQRFGV
EHKEQLKKLRMNVDVLAMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTFAGAYDEG
QVTAAIRRELLREGQVFFVHNRVQTIDRAAARIRELVPEARVVTAHGQMGERQLEHVMLD
FWERRADVLVATTIVEAGLDISTANTLIVERSDQMGLSQLHQLRGRVGRSRERGYCYFLY
PPDKPLSQEAHDRLATLAANTDIGAGMAIATKDLEMRGAGNLLGGQQSGHIADVGFDLYV
RLVGEAVAEYRGDTAEEAEQETRIELPVDAHLPEDYISSERLRLEMYKTIAEVRSDADLD
EVRDELQDRYGPLPEPVETLLAVAGFRLRAKEAGLREVIVQGSNVRFSEVRLPESRQLKL
ARLHPKSTYKATAGQVLIPRPATSPLGGRPLQNRDLLAWADQVVREVLTLPQAPGAAAPA
ASAAPAAGGAPAPGTPRKATSTAVKGPTGAKASSGAKASAGAKAARRAPAPDPRAKVPAP
RGQGVAKGGHTKRPPRGA
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaacacgtgacgggcaggcttgccggcatcctcgacctcctgggcaccgatccc
gtcgtcgcggaatgtgtgtcggatgcgcgcaccggcgtcctgcactcctgtgacatcacc
gcccccgggtccgtccgggccttcctcaccgccgagctggtgcggcggaccgagcgtacg
ttcctcctcgtcaccgcgacctaccgcgaggcggaggagcaggtcgccgcgttgcaggct
ctgctcggccatgacgtcgccgcctattaccccgcctgggagaccctgccgcacgagcgg
ctcagcccccgctccgacaccgtcgggcgccgcctggaggtgttgcggaggctggcgggc
aacgacccgcagccggctcctcgggtggttatcgcgccggtccggtccctgctccaaccc
caggtggccgggctcgctgacatcgccccggtccggttgcgccgtggggaggaccacgac
atcgacgccatcgccgaggccctggtcgccgccgcctacctgcccgtcgacatggtccag
cggcgaggggagttcgccgtccgcggcggcatcgtcgacgtcttcccgccgacccacgag
catccggtccggatcgacttcttcggggacacggtggaggacctgcgctacttcatggtc
gccgaccagcgctccaccgatcgcgtcctcgacgaggtcatctgctccccctgccgtgag
ctgttgatgacggcggacgtcaaggcgcgcgccgaggccctgatcgccgaccaccccgaa
ctcaccgagatgctggaccggatcgcccagggactcggggccgacggcatggagtcgctc
gccccggccctcgtcgaccggatggagctgctcctcgacgtactgccctccgacacgttg
gtgctggtggcggatcccgagctggtccgcacccgcgccgccgacctcgtcacgacgtcg
gaggagttcctccaggccggctgggccgcagcggcttccggcggcaccgccccgatcgac
ctacgcgcatcctcctaccaggagctgggagcggtgcgggcccatgccctggaactgggc
cagtcctggtggacgatctccccgttcgccgtcggacccgacgaggaccgcgacgcggcc
gcggacgcgctcgcccatatccaggccggcgccacgccggtgcggacgatccgggcccgg
gacgcccacagctgggccggtgacaccgagcgggcggtcgccgagatcgccgccgccgtc
cgggacggctggcgggtcgtgatgtccgcggagggccacggcaccacccagcgcctcgcc
gaactgctcggcgagcacgacgtggcggctcgggtggtggaggacgtcaccgagccaccg
cgcgagcatgtcgtcgaactggtcaccaccggcgtacgccacggcttcctcgccgacgac
gtacggctggcggtctggacggccggggacctgtcgggccaggcgcagaccgaccgcgcc
gagcggaagatgccggcccggcgccgcaaggcgatcgacccgctggaactgaagccgggc
gatccggtggtccacgagcaccacggcgtcggccgctacgtcgagatgatgcaacgtacg
gtcgccggggcgacccgcgactacatggtcatcgagtacgcgccgagcaagaagggccag
cccggcgaccgggtcttcgtcccgatggagcagctggaccaggtgacccgctacgtgggt
ggcgagctgccggccctggacaagatgggcggctccgactgggccaagcgcaagtcgcgg
gcccgctccgcggtgaaggagatcgccggggagctggtccgcctctacgccgcccggcag
gctgccaaggggttcgcgttcagtgcggactccagcatgcagcgcgagctcgaggacgcc
ttcgactacaccgagacccccgaccagttgtcggccatcgacgaggtcaagcgggacatg
gagcagaccgtcccgatggaccggctgatctgtggcgacgtaggctacggcaagaccgag
atcgccgtccgggcggcgttcaaggcggtgatggactccaagcaggtggccatcctggtg
ccgaccaccctgctggtcacccagcactacaacaccttcgccgagcgctacgccggcttc
ccggtgcgggtggcggcgctgtcccggttccagaccgacaagcaggcccgcgaggtgctg
gacgacctggcggccggcaaggtggacgtcctcgtcggaacgcaccgcctgctgtcgaag
gaggtcgtcttcaaggacctggggctggtcatcatcgacgaggaacagcgtttcggtgtc
gagcacaaggagcagctgaagaagctgcggatgaacgtcgacgtcctggccatgtccgcc
acgccgatcccgcgcacgctggagatggccatcaccggcatcagggagatgtcgacgatc
gccacgccgccggaggagcgccacccggtgctcaccttcgccggcgcgtacgacgagggg
caggtcaccgcggcgatccggcgcgagctgctccgggagggtcaggtcttcttcgtccac
aaccgggtgcagaccatcgaccgggccgcggcccggatccgggaactggtccccgaggcg
agggtcgtcaccgcgcacggccagatgggggagcgccagctcgaacacgtgatgctggac
ttctgggagcgccgcgcggatgtgctggtcgcgaccacgatcgtcgaggccggtctggac
atctccacggccaacacgctgatcgtcgagcggtccgaccagatgggcctgtcccagctg
caccagctgcgtggacgcgtcggacgcagccgtgagcggggatactgctacttcctctac
ccgccggacaagccgctctcccaggaggcgcatgaccggctggccactctcgccgcgaac
accgacatcggcgccggcatggcgatcgccaccaaggacctcgagatgcgcggcgcgggc
aacctgctcggcggccagcagtcggggcacatcgccgacgtcgggttcgacctgtacgta
cgtctcgtcggcgaggccgtggccgagtaccgcggcgacacggccgaggaggccgagcag
gagacgcgcatcgaactgccggtcgacgcccacctgcccgaggactacatcagctcggag
cggctgcggctggagatgtacaagaccatcgccgaggtgcgttccgacgccgatctcgac
gaggtccgcgatgagctccaggaccgctacggtccgctgccggaaccggtcgaaaccctg
ctggcggtggcgggcttccgcctgcgggccaaggaggccgggctgcgcgaggtcatcgtc
cagggctcgaacgtgcggttctccgaggtgcgcctgcccgagtcgcgccaactcaagctg
gcccgcctgcacccgaagagcacctacaaggccacggccggacaggtgctgatcccgcgt
ccggccacctccccgctgggcgggcggccgttgcagaaccgtgacctgctcgcctgggcc
gaccaggtcgtccgcgaagtgctgacactgccgcaggcgcccggggcggccgcccccgcg
gcgtccgcggcccccgctgccggtggggcgccggcgcccggtacgccgcgcaaggcgacc
agcacggcggtgaagggcccgaccggagcgaaggcgtcgtctggggcgaaggcgtcggct
ggggcgaaggccgcccgacgtgccccggcgccggatccgcgggccaaggtcccggctccg
cgcggacagggggtcgccaagggtggccacaccaagcggcccccgaggggcgcgtag
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