Raineyella fluvialis: Rai3103_12990
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Entry
Rai3103_12990 CDS
T06259
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rain
Raineyella fluvialis
Pathway
rain03420
Nucleotide excision repair
rain03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rain00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rai3103_12990
03430 Mismatch repair
Rai3103_12990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rain03400
]
Rai3103_12990
Enzymes [BR:
rain01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rai3103_12990
DNA repair and recombination proteins [BR:
rain03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rai3103_12990
MMR (mismatch excision repair)
Other MMR factors
Rai3103_12990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QGF24416
UniProt:
A0A5Q2FJD2
LinkDB
All DBs
Position
2832509..2835694
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AA seq
1061 aa
AA seq
DB search
MPVRHRLPAEGSPPMTLIDDSTLAELVGIPFSTEQLAAITAPLAPGVIIAGAGTGKTTVM
AARVVWLVASGLVRPEQVLGLTFTRKAARELAARISTSLEAAGLLGDTEMSGAPTVATYD
AFAGMLCTEHGPRLGVEGDLRLVDSAELYALADRVVAAGATSAPALSGLSVATVVERVVA
LSGQMLANGVTAAQLAEQSRAFRAELEEAPLYRGKPYKDVTDALGVLEARQELLGFVSAL
WAAKARDGVVEFADRTALAARLAAEVPGVGRQLREEFRVVLLDEYQDTSAAQTAMLAGLF
SGPEPASGRGFPVTAVGDPLQAIYEWRGAAVGTIAAFPEVFRAADGTPAHRFTLRTNRRS
GTAILDVANLVSAPLRAAGGPACPESLVGPAQAGPGEVTAHRARSWDDEQRHVVRTLLAE
HDRGVSWADIAVLGRRRADLGVLHRVLEDAGIPAVLVGLGGLLELPECAQVIAVLRLVHD
VTDNRAAVAVLSGPRWRLGARDLDAVARRAAHLAGEGGDPCLLDAVDDPGPDGLSVAARE
RLLALSGEFTRLRSHLDEPVGDLVARVIRVSGIVPELLAERGPDGARQLDALIEAVEEYG
ARRPSVGLGGLLAWFDAEIRVGRGMEQAPPTARDAVTLLTVHASKGLEWDVVLLPATVDG
VFPGSPDPDDWTRAAQVLPFELRGDAAGLPALGEVSRQGLAQMRAELKDLARDGEKRLGY
VAVSRARHRLHVSGHRWHPDTIRERSESPFLRAARTVLDLKEDEPAEEVNPYTEGDERAA
SARVESIADPMSVELAAQVDRWRTVFAAGGRPVLAPDADVAERASRWRTDGERLLARARA
RRTPVDADLPGRLSVTEIVRGVADPDVLRDEVRRPMPVQPSRRATLGTMFHAWVEERFRH
QGTLDVHFEDEAGIAVGPVHRSAADEEMLAELEGLRRAFDAGRFSDRQPLALEVPFALSL
GGRLVRGRIDAVYRQPPGSGSDYLVVDWKTHRGGTADPLQLALYRLAAARTYGVDVERVA
AGFYYVRRDRWDPVVDLPGAEELVAHVSRLTASLGGTSLAP
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttcgccaccgattgcccgccgaggggagcccgccgatgacgctcatcgatgac
agcacgctggctgaactcgtcggtatccccttctcgaccgagcagttggcggcgatcacc
gccccgctggcgccaggcgtcatcatcgccggtgccggcaccggcaagaccacggtgatg
gccgctcgtgtcgtctggctggtggcctccgggctcgtccgccctgagcaggtgttgggg
ctgaccttcacccgcaaggcggcgcgtgagctcgccgcccggatctcgacgtcgctggag
gccgccgggctgctcggcgatacggagatgtccggggccccgacggtcgccacgtacgac
gccttcgccggcatgctctgcacggagcacggcccccgcttgggggtcgagggcgacctg
cggctcgtcgactccgcggagctctacgccctcgccgatcgggtcgtcgccgcgggggcg
acgtcggcgcccgcgctgtcgggactgtcggtggccaccgtcgtggaacgggtggtcgcg
ctgagcggtcagatgctcgccaatggagtcaccgcggcgcagctggccgagcagtcccgg
gcgttccgggcggagctggaggaggcgccgctgtatcgcggcaagccgtacaaggacgtc
accgacgccctcggtgttctcgaggcacgccaggagctcctgggcttcgtcagcgccctg
tgggcggcgaaggcacgcgacggtgtcgtcgagttcgctgaccggacggccctcgcggcc
cggctcgcggcggaggtcccgggcgtcggacgtcagctccgcgaggagttccgggtcgtg
ctgctcgacgagtaccaggacacttccgcggcccagacggcgatgctggcgggcctcttc
tcgggcccggagccggcatcggggcgagggtttcccgtcaccgctgtcggcgatcccttg
caggccatctacgagtggcgaggtgcagccgtcgggacgatcgctgccttcccggaggtc
ttccgcgctgcggacgggacacctgcccaccggttcacgctgcggaccaaccgccggtcg
ggcaccgccatcctggacgtcgcgaacctggtctccgccccgttgcgcgccgccggcggc
ccggcctgccccgagtcgctcgtcggaccggcgcaggccgggcccggggaggtcaccgcc
caccgggcccgcagctgggacgacgagcagcgccacgttgtccgcacgctcctggccgag
cacgaccggggtgtgagctgggctgacatcgccgtcctggggcggcgccgggccgacctc
ggtgtcctgcaccgagtgctggaggacgcgggcatccctgcggtcctggtggggctgggc
ggcctgctggaactgccagagtgtgcccaggtcatcgccgtcctgcggctggtgcacgac
gtgacggacaaccgggcggcggtggccgtgctgtctggtccacggtggcggctcggcgcc
cgcgatctggacgccgtcgcgcgtcgggctgcccacctcgcgggggaggggggtgatccg
tgcctgctggacgccgtcgacgacccggggccggatggcttgtccgtcgccgcacgcgag
cgactgctggccctgtcgggggagttcacccgcctccgcagccacctcgacgagcccgtc
ggggacctcgtggcgcgggtgatccgggtcagtgggatcgtccccgagctcctcgccgag
cgcggccccgacggtgcccggcagctggacgcgctgatcgaagccgtcgaggagtacggg
gcacgtcggccctcggtcgggctggggggtctgctcgcctggttcgatgccgaaatcagg
gtgggccggggcatggaacaggccccgccgacggcccgcgatgccgtcaccctgctcacc
gtgcacgcgtccaagggtctggagtgggacgtggtcctcctgccggccacggtcgacggg
gtgttcccagggtcgccggacccggacgactggacccgtgccgcgcaggtcctgcccttc
gagcttcgcggcgacgcggccggcttgcccgcgcttggcgaagtgtcccgacaggggctg
gcgcagatgcgggccgagctgaaggacctggcccgcgacggggagaagcgactcggatac
gtggccgtgtcgcgcgcgcggcaccggttgcatgtgtccgggcatcgctggcaccccgac
accatccgcgagcggtcggagtcgccgttcctccgcgcggcccggaccgtgctcgacctc
aaggaggacgaacccgccgaagaggtcaacccgtacacggagggggacgagcgggccgcc
tctgcccgggtggagagcatcgccgacccgatgagtgtcgagctggccgctcaggtggac
cgttggcggacggtgttcgcggccggcgggcggccggtcctggcaccggacgccgacgtc
gccgagcgagcttcgcggtggcggaccgatggcgagcggttgctcgcccgcgcccgggcc
cgacgaacacccgtcgacgctgacctgcccgggcgcctgtcggtcaccgagatcgtccgg
ggggtggccgatcccgacgtgctgcgtgacgaggtgcgccgcccgatgcccgtgcagccc
tcgcgccgggccacgctgggcaccatgttccatgcctgggtggaggagaggttccgtcac
cagggcacccttgacgtccacttcgaggacgaggcgggcatcgcggtcggaccggtccat
cgctcggccgccgatgaagagatgctggccgaactcgagggactgcgccgcgcgttcgac
gcgggacggttctccgatcggcagccgctcgcccttgaggtgccgttcgccctgtcgctg
ggcggcagactcgtccgtgggcggatcgacgccgtctaccgtcagccccccggatcgggc
tccgactacctggtggtggactggaagacccaccgcggcgggacggccgatccgctgcag
cttgcgctgtaccggctggcggccgcccggacgtacggtgtcgacgtggagcgggtggcc
gccggcttctactacgtccgtcgcgaccggtgggacccggtcgtggacctgcctggcgcc
gaggagctggtcgcccacgtgtcccggctcacggcgtccctgggcgggactagtctggcg
ccgtga
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