Raineyella fluvialis: Rai3103_13005
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Entry
Rai3103_13005 CDS
T06259
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rain
Raineyella fluvialis
Pathway
rain03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rain00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Rai3103_13005 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rain03400
]
Rai3103_13005 (recD)
Enzymes [BR:
rain01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Rai3103_13005 (recD)
DNA repair and recombination proteins [BR:
rain03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Rai3103_13005 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
RecD_N
UvrD-helicase
Helicase_RecD
SH3_13
AAA_22
Phageshock_PspD
AAA_16
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QGF24419
UniProt:
A0A5Q2FCA4
LinkDB
All DBs
Position
complement(2836610..2838502)
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AA seq
630 aa
AA seq
DB search
MTSVIGTGLVAAFDAAGVLGFADVQVAQQLAFLGGASDPRIPLAIALAVRAVRAGSVCVD
LATVRQAVFESDESAVDVSALDWPDLEGWLSTLRDCPLVSVGADGPPGRPLRLVGTLLYL
DRYWRDEQLVRADVEIRRSTPMSGVDLDRDRVVGVLRSVFPRVEGPAALAPGEPDHQLAA
AATTVATRLCVLQGGPGTGKTSTVARILVVLATLEPDLHIGLAAPTGKAAARMGEAVKDA
LAALEPTAPGAADPAVVARLGRLQATTVHGLLGWRRDSTTRFAHDRTRPLPYDLIVVDEM
SMVSLSLMARLLEATRPDARLLLVGDPDQLASVEAGAVFSDIGALVRAQDQTLPASTATH
RMLDDLIAPVDRPAVAKPGLVRLTHTWRFQGRIADLAMAIRDGDTGRVDALIDALGPEDN
VSFTPVSRGPADQAYDSLRQRVEAWGTALEERAEAGDAHGALEVLDRHRLLCAHRRGPAG
VATWNRIARAWLGRSGEEPMALGEPLLVTRRDKALQVYNGDVGAVVRTGAGRRLALADLH
QRSVRFLAPVQLTGLVPMYASTIHKAQGSQFQEVSVILPDRGSALLTRELLYTAITRASQ
GVHLYGTRDALREAVSRRANRASGLADRQR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgtgatcgggaccggcctggtcgccgccttcgacgcggcgggtgtcctcggt
ttcgccgacgtccaggtcgcccagcagttggccttcctcggcggggccagcgatccgcgg
atcccgctcgcgatcgccttggccgtccgggccgtccgcgcaggctcggtgtgcgtcgac
ctggccactgtgcggcaggccgtcttcgagagcgacgagagcgccgtcgatgtctcggcc
ctcgactggcccgatcttgagggatggctgtccaccctgcgagattgccccttggtgagt
gtcggcgccgacggtccgcccggtcgcccgctccggctggtcggcaccctgctgtacctc
gatcggtactggcgcgacgagcaactcgtccgggccgacgtcgagatccgtcgcagcacg
ccgatgtccggtgtggacctggaccgggaccgggtggtgggcgtgctgcgttccgtcttc
ccgagggtcgagggaccggccgcgctcgcacccggcgagccggaccaccagctcgcggcc
gccgccacgaccgtcgccacccgactctgcgtgttgcagggcggtccgggcaccggcaag
acgtcgaccgtcgcccgcatcctcgtggtgctggcgaccctggagcccgacctccacatc
gggctggccgccccgacgggcaaggcggcggctcggatgggggaggccgtcaaggatgcc
ctcgccgctctggaacccaccgcccccggagccgccgatcccgccgtcgtggcccggctc
ggacgtctgcaggccacgaccgtgcacggtctgctcggctggcggcgcgacagcacgacg
cgcttcgcccatgaccgtacgcggccgctgccgtacgacctgatcgtggtggacgagatg
tcgatggtgtcactgtcgttgatggcccggctactcgaggcgacccggccggatgcgcgg
ctgctgctggtgggtgatcccgaccagctcgcctcagtggaggcgggagcggtgttctcc
gacatcggcgccctggtgcgggcccaggatcagactctgccggcctccactgcgacccac
cgaatgctggatgacctcatcgcccccgtcgaccggccggccgtggccaagcccggattg
gtacgcctcacccacacctggcggttccagggccgcatcgccgacctcgcgatggcgatc
cgggacggcgacaccggtcgcgtggacgccctgatcgatgctctggggcctgaggacaac
gtgtccttcacccccgtttcccgaggcccggcagatcaggcgtacgactcgttgcggcag
cgggtcgaggcgtggggcaccgccctggaggaacgagccgaggccggagatgcccacggt
gccctcgaggtgctcgaccggcaccggctgctgtgcgcccaccggcgaggacctgccggc
gtagcgacgtggaaccgcatcgcccgcgcctggctcgggcgcagcggggaggagccgatg
gctctcggagagccgctcctcgtcacccgccgggacaaggccctgcaggtgtacaacggc
gatgtgggagccgtcgtccgcaccggcgcaggccgacggctcgccctcgcggacctgcac
cagcgcagcgtacggttcctcgcgccggtgcagctgaccgggctggtcccgatgtacgcc
agcaccatccacaaggcgcagggcagccagttccaggaggtgtcggtgatcctccctgat
cggggatcggcgctgctcacgcgggaactgctctacacggcgatcaccagggcgtcacaa
ggcgtgcacctctacggcacccgggacgcgctacgcgaggcggtctcccgccgggccaac
cgcgcatccggactggccgatcgccagcgctga
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