Raineyella fluvialis: Rai3103_15440
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Entry
Rai3103_15440 CDS
T06259
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rain
Raineyella fluvialis
Brite
KEGG Orthology (KO) [BR:
rain00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rain03019
]
Rai3103_15440 (hrpA)
Enzymes [BR:
rain01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rai3103_15440 (hrpA)
Messenger RNA biogenesis [BR:
rain03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rai3103_15440 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
HA2_C
Helicase_C
AAA_22
AAA_19
nSTAND3
HA2_N
NACHT
T2SSE
SLFN-g3_helicase
AAA_30
UvrD-helicase
SRP54
ResIII
ABC_tran
TsaE
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QGF25282
UniProt:
A0A5Q2FE83
LinkDB
All DBs
Position
complement(3351369..3355271)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSPTITFPAELPISARVEDIAAALSESQVVIVAGETGSGKTTQLPKLCLRLGRTRIAHTQ
PRRIAARTVAERIAEEMGVDLGNEVGYQVRFTRKAQRDTALTVMTDGILLAGISHDRDLR
TWDTIIIDEAHERSLNIDFLLGYLKQLLPRRPELKVIVTSATIDTERFSRHFDDAPIIEV
SGRTYPVEVRYRALTDNGAVDDETQDVTPAVEKDQTEGICDAILELSAEGPGDILVFLSG
EREIRDAEQAISDLKLPRTEVLPLFARLSSAEQHRVFSPHTGRRIVLATNVAETSLTVPG
IRYVVDPGTARISRYSTRTKVQRLPIEPVSRASADQRAGRCGRVAPGICIRLYAEEDYLS
RPEFTEPEILRTNLASVILQMTEAGLGDIEGFPFVEPPESAQITDGMRLLDELGALAPQA
TRSRPRLTRMGHRLARIPLDPRMGRMLLAGEHYGCLREMVVLVAGLTIMDPRERPREQRE
KADQLHRRFWAPMPAPGGSPDAADAADAADAADAPAPEPDGSDFIALLRLWDYLTTSRRA
MSGNAFRRMCRDEFLNYLRIREWQDLQNQLRDICRDLGMTRNEQTADADRVHIAVLTGLL
SRVGLADLKDERKNRPRDGRGRVRRAPREYLGARGARFAINPGSALAKQPPELVMANELV
ETTRLWAHTVAGIRPEWVEEVGGHLLKRHYAEPHWSMRSGQAVAYETASLYGVPIIARRQ
VSYARVDPVAAREIFLRSALVEGEWHTRHHFWARNEETRRRAEELEERTRRRDIVVDDQT
LFDFYDARVPHDVCTVAAFDAWWRSKRHEDDGFLDLSLEDLVQDTADLGRAGDFPDTWRV
GEHTLDVEYVFDPGAGADGVSVRIPLPILSALPSAPFTWQVPGLRLELVTQLIRSLPKAQ
RTRVVPAPDWARRLLAELADDIRDGEIDPSVTSLTAALARRLAVDVGLRVAPADWDLAKL
PDHLRVTFVVVRPGGSRGGADGEVEVARGKSLAELQQEHTRTVAATLSKASQTARHAGST
SWVFGSLPREITVERLGTRATGHPALVDEGTSVGSVVQDTPAHAAASHRVGLRRLVLLNT
PDPTRWVVSHLPNPDKFALGSSPYASVPDLLADARLKSVGDLVARAVDPEDVRDERAFAA
LCDTVRQDNADHMRRVVAIAAEVLRADQQVSLALGSVTDPDVRADVTEQRANLVFPGFIA
ATDDPYYERLPVYLRAIVARLAALPGAAVRDRQGMETVNALEEAYADLCSRQPPGRLPAA
VDEIGWMLEELRVSLFAQTLGTRMTVSAKRVRKAIERAAT
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
ctgagcccgaccatcacgttccccgcggagctgccgatcagcgcgcgggtcgaggacatc
gccgccgcgctgtccgaatcccaggtcgtcatcgtggcgggggagacgggctccggcaag
accacccaattgccgaagttgtgcctgcggttggggcgtacgcggatcgcgcacacccaa
ccgcggcgcatcgccgcgcgtacggtggccgagcgcatcgccgaggaaatgggcgtcgat
ctcggcaacgaggtcggttaccaggtccgcttcacccgcaaggcccagcgcgacacggcg
ctgaccgtgatgaccgacggcatcctgctcgccgggatctcccatgaccgcgacctgcgg
acctgggacaccatcatcatcgacgaagcccacgagcggtccctcaacatcgacttcctg
ctcggctacctcaagcaactgctgccgcggcgaccggaactcaaggtcatcgtcacctcg
gccaccatcgacacggagcggttcagccggcatttcgacgacgccccgatcatcgaggtg
tcgggtcgtacctaccccgtggaggtgcgctaccgggccctgaccgacaacggagcagtg
gacgacgagacgcaggacgtcacccctgcggtcgagaaggaccagaccgagggcatctgc
gacgcgatccttgagctgtcggccgagggaccgggcgacatcctggtcttcctgtccggc
gaacgggagatccgcgacgccgagcaggccatcagcgacctgaagctgccgcgcacggag
gtgctgccgttgttcgcccggctgtcgtcggccgagcaacatcgggtcttcagcccgcac
accggccgtcggatcgtcctcgccaccaatgtcgcggagacctcgctgaccgtgcccggc
atccgctacgtcgtcgatccgggaaccgcgcggatctcgcggtattcgacccggaccaag
gtgcagcgcctgccgatcgagccggtctccagggcctcagcggaccagcgggccggccga
tgcggccgcgtcgcccctggcatctgcatccgcctctacgcggaggaggactacctctcg
cgaccggagttcaccgaaccggagatcctacggaccaacctcgcctcggtgatcctgcag
atgaccgaggccggactcggcgacatcgaggggtttcccttcgtcgaaccccccgagtcc
gcccagatcaccgacgggatgcgcctgctcgacgagctgggcgcgctcgcgccgcaggcc
accaggtcccggccacgactgacccggatgggtcaccgcctggcccggatcccgctcgat
ccccggatgggtcggatgctgctggccggtgagcactacggctgcttgcgggagatggtg
gtgctcgtcgccgggctgacgatcatggatccccgggagcggccgcgcgagcagcgggag
aaggcggaccagttgcaccggcgcttctgggcaccgatgccggctccgggaggctccccc
gacgccgccgacgccgccgacgccgccgacgccgccgacgccccggcccccgagccggac
ggatccgacttcatcgccctgctgcggctgtgggactacctcacgacgagccgccgggcg
atgtcgggcaacgccttccgccggatgtgccgcgacgagttcctcaactacctgaggatc
cgggagtggcaggacctgcagaaccagttgcgcgacatctgccgagacctggggatgacc
cgcaacgagcagacggcggacgccgaccgggtgcacatcgcggtactgaccggtctgctc
tcgcgggtcgggcttgcggacctcaaggacgagcggaagaaccgccccagggatggccga
gggcgtgtccgtcgggcgccgcgggaatacctcggcgcccgcggcgcccggttcgcgatc
aaccccggttcggcgctggccaagcagccccccgagctggtgatggccaacgagctggtg
gaaaccacccggctgtgggcgcacaccgtggcgggcatccgccccgagtgggtcgaggag
gtcggcgggcatctgctcaagcgccactacgccgagccgcactggtccatgcgctcgggc
caggcggtggcgtacgagaccgccagcctgtacggggtcccgatcatcgcgcgccggcag
gtgtcgtacgcccgggtcgacccggtggccgcccgcgagatcttcctccgctcggcgctg
gtcgagggcgagtggcacacccgtcaccacttctgggcgcgcaacgaggagacccgccgt
cgcgcagaggagctggaggagcggacccgccgccgcgacatcgtcgtcgacgaccagact
ctcttcgacttctacgacgcccgggtgccgcacgacgtctgcacagtggcggcgttcgac
gcgtggtggcggagcaagcgccacgaggacgacgggttcctcgacctgtccctcgaggac
ctcgtgcaggacacggccgatctgggtcgcgcgggcgacttccccgacacctggcgggtg
ggggagcacaccttggacgtcgagtacgtcttcgacccgggggcgggcgccgacggcgtc
agcgtgcgcatcccactgcccatcctcagcgcactgccgtcggcaccgttcacctggcag
gttcccgggctgcggctggagctggtgacccagctgatccggtcgctgcccaaggcgcag
cgcacccgggtggtgccggcgcccgactgggcgcgtcggctcctcgccgagctggccgac
gacatccgcgacggtgagatcgacccgtccgtcacgtcgctgaccgcggccctcgcccgc
cgactggcggtcgatgtcggcttgcgtgtcgcacccgccgactgggatctggccaagctg
cccgaccacctacgcgtcaccttcgtggtggtccgacccggcggttcgcgcggcggcgcg
gacggcgaggtcgaggtggcccgcgggaagtcgctggccgagctgcagcaggagcacacc
cgcaccgtcgccgccacgctgtccaaggcctcgcagactgcccggcacgcggggtcgacc
agttgggtcttcggcagtctgccccgcgagatcacggtcgagcggctcggcactcgggcc
acaggccatccggcgctggtggatgaggggacatcggtcggcagtgtcgtccaggacacc
ccggcgcatgcggcggccagtcaccgcgtcggcctgcggagactggtcctgctcaacact
ccggacccgacccggtgggtggtctcgcacctgcccaatcccgacaagttcgccctggga
tccagcccgtacgccagcgtccccgacctgctcgccgacgcccggctgaagtccgtgggc
gatctggtcgcccgggcggtcgacccggaggacgtacgggatgagcgtgccttcgccgcc
ctgtgcgacaccgtccgccaggacaacgcggaccatatgcgccgggtggtcgccatcgcg
gccgaggtgctgcgggccgaccagcaggtcagtctcgcgctgggatccgtcaccgatccc
gacgtccgggcggacgtcacagaacagcgcgccaatctggtcttccccggattcatcgcc
gcgaccgatgatccctactacgagcggctacccgtctaccttcgcgcgatcgtggcgcgg
ctggcagctctgcctggtgccgccgtccgtgaccgccaggggatggagacggtgaacgcg
ctggaggaggcgtacgccgacctgtgctcccgccagccacccggccggctgcctgccgcc
gtggacgagatcggctggatgctcgaggagctgcgggtcagcctgttcgcccagaccctc
ggcacccggatgacggtctcggcgaaacgggtccgcaaggcgatcgagcgggctgccacc
tag
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