KEGG   Rickettsia akari: A1C_01015
Entry
A1C_01015         CDS       T00601                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rak  Rickettsia akari
Pathway
rak03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A1C_01015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rak03021]
    A1C_01015
   03400 DNA repair and recombination proteins [BR:rak03400]
    A1C_01015
Enzymes [BR:rak01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A1C_01015
Transcription machinery [BR:rak03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A1C_01015
DNA repair and recombination proteins [BR:rak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A1C_01015
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 RnfC_N Cauli_DNA-bind
Other DBs
NCBI-ProteinID: ABV74533
UniProt: A8GMA8
LinkDB
Position
190244..194362
AA seq 1372 aa
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVIDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFAKLKHELYEELQTTSSEVKKKKIVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVHVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPRVSDEPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPSSEKILGRTAAI
DIFHPVTNALILNKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYGAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVVKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAEGAV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITD
SGGTTLLAGEKIDRHEFEEINKKAIKNGLKPAAAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENI
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcaaataagg
attaatatagcaagtcctgatcaagtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacttttaaacctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcgtatgaaaaaccgt
ggcattacgtgtgagaaatgcggtgttgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgcggctcccgttgctcatatttggtttttaaagtcactacct
tcaagaattagtacgcttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtaattgatccagggttatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcgtttactgcttctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgattttgcaaagttaaagcacgaa
ttatatgaggaattacaaactacttcttcagaagtcaaaaagaaaaaaatagtcaagcgt
ttaaaattagtagaggattttttagagtcagaaaacaagccggaatggatgattatggat
gttttaccggttattcctcctgaaattagaccgcttgttatgcttgatggtggaagattt
gctacttcagatttaaatgaactctatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcagtggatgcgttatttgataacggtcgtcgcggtagagcagcaaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcagggtcgtttccgtcag
aacctacttggtaaaagggttgactattcaggacgttcggttatcgtggtcgggcctgag
cttaagctccatcagtgcggtttacctaaaaaaatggcattggagctgtttaagccgttt
atatattctaagcttgagttgtacggtattgctacgactattaaagccgcaaaaagaatg
gtggaagctgaaaagcctgaagtttgggatgtgcttgaagaagtcataagagagcatccc
gttttacttaatagagctccgacattgcatagattaggtattcaagcatttgaaccacta
ttaatcgagggtaaagcgattcagcttcatccgcttgtttgtgctgcgtttaatgcagac
tttgacggtgatcagatggcggtacatattccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccctgcaaacggacgtccaattatt
gtaccggataaagatatagtactcggtttatactatctaacccttgcatttgataatgaa
gtaggcgaagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttatcactattcatacaaagataaaatatcgtagaaatcagctaaatgctgaaggtaaa
atggtccatgttattattgatactacttacggtcggttaatggtcggtgaattactgcct
tctaatcctaatatagaattcaagtttattaataaacaactaactaaaaaagatatatca
ttagttatagatttagtttatcgccactgcggtcaaaaagctacagtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccagaatctaagagtactcatatcaatgaaactcagcttgaaataaaa
gagtttgaacaacaatattcaaacggtttaattacttatggagagaaatacaataaagta
gttgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgccacgggttagtgatgaaccgaatcatcaaaaaataaatgctatatatatgatggct
atctccggagcaagaggttctttccagcaaattaagcagttagggggtatgcgagggtta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaactgcaagctcaggttacttaacaagaaaattagtagacgttgcacaagat
tgtattattaccgaaaaagattgtggaactgataaagggattgaagttaagagtgttatt
gaagggggagaagttatagtaccttcatctgaaaagattttaggtcgtactgctgctatc
gatatatttcatcctgtaactaatgctctaattctcaacaaaggcgagcttattaatgaa
gcaaagttagaacagattgagtcggctggactcgacagaattatgataaaatccgtatta
acttgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgctaccggt
acgttggtgtcggagggtgaggcaatcggggttattgctgctcaatctatcggtgaacca
ggtacgcagcttacaatgagaactttccatattggaggagcggcaacaaaaggtgctgaa
gtttcttccgttgaagcttcctatggcgcaaaagtgaaaattataagtcgtaacgttgtt
attaattccgaagaacgcaaaattgttatgagccgaaattgtgaattattattacttgat
aataatggtaatgaaaaggctcgtcataagattccatacggtgctagattacttgttgat
gacggcgatatggttgttaaaactcaaaaactagcggagtgggatccttatactataccg
attatcacggagaaatcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctactggaataccaagtaaagttattattgaatcaaagcag
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctgaaggtgcagtt
ataaccttatcaaacggtttagaagctagatattacttaccggttggagcagttttaagc
gtagaagatggagtacaaatctctgtaggtgatattattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccgagagttgccgagcttgtagaagcaaga
cgccctaaagatcatgcagttattgccgaggttgacggtagagtagaattcggtaaagac
tataaatctaagagacgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtacctaaaggtaagcatgttgtagttaacgaaggtgactttgttaaaaaaggcgat
ttattgattgatggtaatccagtacttcaagatattttaaaagtaatgggtgtagaggtt
cttgcaaattatattgttaaagaggttcaagctgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaggttattattcgtcagatgttacaaaaagtagaaatcacggat
tcaggtggaactaccttattagcaggtgaaaaaatagatagacatgaattcgaggagata
aataaaaaagctattaaaaacggtttaaaacctgctgcagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctctgctgcatcattccaagagact
actagagttttaacggaagcagctattgcgggtaaagtagataagttacgaggattaaaa
gaaaatgtgatagttggacgattagtacctgctggaaccggttattttatggataaaatg
cgtaaagcagccgtgaagcttgatgaagaaaatatataa

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