Rickettsia akari: A1C_06665
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Entry
A1C_06665 CDS
T00601
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rak
Rickettsia akari
Brite
KEGG Orthology (KO) [BR:
rak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A1C_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rak03021
]
A1C_06665
Transcription machinery [BR:
rak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A1C_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Nrap_D6
Motif
Other DBs
NCBI-ProteinID:
ABV75556
UniProt:
A8GQ81
LinkDB
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Position
complement(1196228..1198135)
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AA seq
635 aa
AA seq
DB search
MSNSNIDNDLDQIDSLLKKAKSKKIPVTYDDINKALPLNENPSIRQLEEAILKFSDAGVD
ILESNEDDDIKLDIGMDEEFKLSTNIDNEPEDEAEEENIGTTDDPVRLYLKDMGGVDLLT
REHEVEIAKRIEEGRKTMTASLCRSPIAMRCFIVWYEDLVNEKMLLRDLIDLEANILHDE
TPENDEEHSSETEGEEHDDNHLSMSRVETQILPNIIERMKKISFICEELLIEAKKCYEKS
FEPKVLQNSKKYNNNLELLLHEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEK
YGVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMIAELSVIESNTGL
LVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNE
LGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAIAPI
DAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIES
KALRKLQHPIRSKKLNSFRSGGKRGEGNPSDLLEA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagcaatatagacaatgatctagatcaaatagatagtttacttaaaaaagct
aaatctaaaaagatacctgtcacttatgatgatataaacaaagctcttcctcttaatgaa
aatccttcaataagacaattagaagaagctatattaaaattttccgatgcgggagtagat
attttagaatctaacgaagatgatgatattaagcttgatatcggaatggatgaagaattt
aagctatctaccaatattgataatgaacctgaagatgaagcagaagaagaaaatataggt
actaccgatgatcctgtaagattatatcttaaggatatgggaggagtcgatcttttaact
cgtgaacacgaagtagaaatcgcaaaaaggattgaggaaggacgcaaaacaatgactgct
tccttatgcagaagccctattgctatgcgttgttttatagtatggtatgaagatttagtt
aatgaaaaaatgttactacgtgacctgatagatttagaagctaacattttacatgacgaa
acacccgaaaatgatgaagaacatagtagtgagaccgaaggagaagagcatgatgataat
cacctatctatgtctagagtagaaacgcagatattacctaatatcatagagcgtatgaaa
aagatttcttttatctgcgaagagctactcattgaagctaaaaaatgttatgaaaaatct
tttgaacctaaagttttacaaaatagcaaaaaatataataataatttggaattattatta
catgaagtttcggaaatacattttaattctaaaagaacggaagaaattttaggtaagatg
tatggaataaatcgtgatttaattaataaagaaacagcttttttaaaacttgctgaaaaa
tatggagtaacgcgccaaaatttcctcgatgaatatataggatcggttatcaatgcagca
tggaaagaaaaaatgctgaaaaataaaaaagtcgcttggaaagagttaattactaaagaa
tcggattatatagatcaaatgattgctgaattatcggttatagaatctaataccggtctt
ttagttaatgattttaaaaaactagtgaatactatacaaaaaagtgagagacaaacactg
caagcaaaaaaggatatgatagaagcgaatttacgtttagttatatctatcgctaaaaaa
tatgctaatagagggttgcagtttttagatttaattcaagagggtaatataggacttatg
aaagcggtggataaatttgaatatcgccgtggttataaattctctacctatgctacttgg
tggattagacaggctataacaagagctattgcagatcaagcaaggactatacgtattcct
gtgcatatgattgaaacaattaataagatactgcgtacttcaagacaaatgcttaatgaa
cttggatacgaaccaacggcaacggaaatcgctaatcgtctttcaatgccgcttgataaa
gtgcgtaaagttatgaaaatagctaaagaacctataagtcttgagaatccagtaggtgat
gatagtgacggcggtcaattaggcgattttatcgaagataagaatgcaatagcaccgatt
gatgcagcgattcagtcaaatttacgagaagttaccactagagtacttgcaacccttacg
cctcgtgaagaaagagtgcttagaatgcgtttcggtataggtatgaatactgaccataca
ttagaagaagtagggcagcaatttaaggtaactagagaacgtataagacaaatcgagtca
aaagctttaagaaagttacaacatcctattagatccaaaaaacttaatagctttagaagc
ggtggaaagcgtggtgaaggtaatccatcagatttactagaggcatga
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